View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_20 (Length: 313)

Name: NF6561_high_20
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_20
NF6561_high_20
[»] chr2 (3 HSPs)
chr2 (111-303)||(923592-923780)
chr2 (12-72)||(22996457-22996517)
chr2 (131-207)||(2191743-2191819)
[»] chr8 (1 HSPs)
chr8 (111-311)||(27540840-27541035)
[»] chr3 (1 HSPs)
chr3 (112-313)||(46833118-46833301)
[»] chr7 (1 HSPs)
chr7 (114-210)||(45032127-45032223)
[»] chr5 (1 HSPs)
chr5 (116-210)||(4357204-4357297)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 111 - 303
Target Start/End: Complemental strand, 923780 - 923592
Alignment:
Q  111 tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa 210  Q
    |||||||||||||| |||||||||||||||||| ||| || | |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  923780 tattattagaacacatgtccatgtgtttgaaacttagatctgctgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaa 923681  T
Q  211 atctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacata 303  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||   |||||| |||||||||||    
T  923680 atctaaaaagacaccatttttcaatccaaactctt-aaagaagaaaaacatatgattagagacacactttaa---aatagtgattgaaacata 923592  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22996517 - 22996457
Alignment:
Q  12 atgaaatagagctatctgttgatgtaagttattaataatgaataaatccaaataacttatt 72  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22996517 atgaaatagagctatctattgatgtaagttattaataatgaataaatccaaataacttatt 22996457  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2191743 - 2191819
Alignment:
Q  131 atgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaa 207  Q
    ||||||||||||| ||  ||||||||||| |||||||| ||||  || |||||| ||||||||| ||| ||||||||    
T  2191743 atgtgtttgaaacttatatcagttgcattcatttctaagctcttcaacgacaccttttttctatataagctcttaaa 2191819  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 311
Target Start/End: Original strand, 27540840 - 27541035
Alignment:
Q  111 tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa 210  Q
    |||||||||||||| |||||||||||||||||| ||| | |  |||||| |||| ||| || ||||| ||||||||||||||||||||||||||||||||    
T  27540840 tattattagaacacatgtccatgtgtttgaaacttagattatctgcattcatttataagctataaaa-gacaccatttttctatctaaactcttaaagaa 27540938  T
Q  211 atctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacatagtaattg 310  Q
     | ||||| ||||| |||||||||||  || |||| |||||||||||||| ||||||| ||||  |||||||||   |||| ||||||||||||||||||    
T  27540939 ctataaaacgacactatttttcaatcaaaattctt-aaagaagaaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattg 27541034  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 313
Target Start/End: Original strand, 46833118 - 46833301
Alignment:
Q  112 attattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaaa 211  Q
    |||||||||| |  ||||||||| |||||||| ||| |||  |||||| |||| ||||||||||||||||||||||||| |||||||||               
T  46833118 attattagaaaatatgtccatgtatttgaaacttagatcaactgcattcatttttaaactctaaaaagacaccatttttttatctaaac----------- 46833206  T
Q  212 tctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacatagtaattga 311  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||  ||||||||   |||| | ||||||||||||| |||||    
T  46833207 tctaaaaagacacca-ttttcaatcgaaactctt-aaagaagaaaaacacatgattagaga--cactttaa---aataatgattgaaacatagttattga 46833299  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 45032223 - 45032127
Alignment:
Q  114 tattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa 210  Q
    |||||| |||| |||||||||||||||||| ||| | ||||||||  |||| |||||||| ||||||||| ||||| ||||||| ||||||||||||    
T  45032223 tattagcacacatgtccatgtgtttgaaacttagataagttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa 45032127  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 4357297 - 4357204
Alignment:
Q  116 ttagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa 210  Q
    ||||||||| ||||||||||||| |||| ||| |||| |||||| ||||| |||||||  ||||||||  ||||| |||||||||||||||||||    
T  4357297 ttagaacacatgtccatgtgttttaaacttagatcagctgcattcatttccaaactct-taaagacacattttttatatctaaactcttaaagaa 4357204  T

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