View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_high_23 (Length: 295)
Name: NF6561_high_23
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_23 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 50608793 - 50609070
Alignment:
| Q |
18 |
ttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacatttcagatatagatcatgattccaagataatgttgat |
117 |
Q |
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| T |
50608793 |
ttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacatttcagatatagatcatgattccaagataatgttgat |
50608892 |
T |
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| Q |
118 |
gaactttttcaggtttattatcttccccaattcaattatatgatcacattgtagaaatcaaatcaataaaaataaatagcaaccttgtgttttcaggcac |
217 |
Q |
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| T |
50608893 |
gaactttttcaggtttattatcttccccaattcaattatatgatcacattgtagaaatcaaatcaataaaaataaatagcaaccttatgttttcaggcac |
50608992 |
T |
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| Q |
218 |
actgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaaggcat |
295 |
Q |
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| T |
50608993 |
actgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaaggcat |
50609070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 1029894 - 1030009
Alignment:
| Q |
26 |
acacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacatttcagatatagatcatgattccaagataatgttgatgaactttt |
125 |
Q |
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| T |
1029894 |
acacatcaagctgcggagaggtggttacatcacatgcaactagcattggacactactccagatatagatgatgactcaaagatcaaaatgatgaacttct |
1029993 |
T |
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| Q |
126 |
tcaggtttattatctt |
141 |
Q |
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| T |
1029994 |
tcaggtttattttctt |
1030009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 20719 - 20835
Alignment:
| Q |
26 |
acacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacatttcagatatagatcatgattccaagat-aatgttgatgaacttt |
124 |
Q |
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|||||| ||||||| ||||||||||||| ||| ||||||| ||||||||||| | | ||||||||||| |||| || ||||| || |||||||||| |
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| T |
20719 |
acacatcaagctgcggagaggtggttacatcacatgcaactagcattggacactactccagatatagatgatgactcaaagatcaaaaatgatgaacttc |
20818 |
T |
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| Q |
125 |
ttcaggtttattatctt |
141 |
Q |
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| T |
20819 |
ttcaggtttattttctt |
20835 |
T |
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