View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_high_24 (Length: 293)
Name: NF6561_high_24
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 33467036 - 33467300
Alignment:
| Q |
19 |
gtagcaggtctcagatctgcaaatagattcacatagagagttagaaatgtcaaatatatgatatgaatgctgatcattgctttatttagctctgtatgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33467036 |
gtagcaggtctcagatctgcaaatagattcacatacacagttagaaatgccaaatatatgatatgaatgctgatcatctctttatttagctctgtatgtt |
33467135 |
T |
|
| Q |
119 |
gaacttttcctgtgatgttataaggggggtcgagtttatacctaggctggtcaactctaacgaaggaccagttgagaatggtgacagggccagtaagcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467136 |
gaacttttcctgtgatgttataaggggggtcgagtttatacctaggctggtcaactctaacgaaggaccagttgagaatggtgacagggccagtaagcat |
33467235 |
T |
|
| Q |
219 |
tcccttcattgggcgcttggtaaagctctgagcaagagctgaccagaagacagtcattgcctttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467236 |
tcccttcattgggcgcttggtaaagctctgagcaagagctgaccagaagacagtcattgcctttg |
33467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 9835063 - 9834938
Alignment:
| Q |
153 |
tttatacctaggctggtcaactctaacgaaggaccagttgagaatggtgacagggccagtaagcattcccttcattgggcgcttggtaaagctctgagca |
252 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
9835063 |
tttatacctaggttggtcattacgaacaaaggaccagttgagaatggtgacagggccagtaagcattcccttcattgggcgtttggtcatgctctgagcc |
9834964 |
T |
|
| Q |
253 |
agagctgaccagaagacagtcattgc |
278 |
Q |
| |
|
| | |||||||||||| |||||||| |
|
|
| T |
9834963 |
atggatgaccagaagacggtcattgc |
9834938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 277
Target Start/End: Complemental strand, 35947907 - 35947786
Alignment:
| Q |
156 |
atacctaggctggtcaactctaacgaaggaccagttgagaatggtgacagggccagtaagcattcccttcattgggcgcttggtaaagctctgagcaaga |
255 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||| || ||||| || || ||||| |
|
|
| T |
35947907 |
atacctaggctggtcatctctaacaaaggaccagtttagaattgtaacagggccggtaagcattcccttcattggccgtttggtcaaactttgagctgtt |
35947808 |
T |
|
| Q |
256 |
gctgaccagaagacagtcattg |
277 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
35947807 |
gaagaccagaagacagtcattg |
35947786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University