View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_high_25 (Length: 275)
Name: NF6561_high_25
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 52004184 - 52004420
Alignment:
| Q |
25 |
tactcctatatgtattagttatgcaaatttaagtgctaccttcaatggatataagagtttgaaatgagattcacactctatttttaagttatgtaatgat |
124 |
Q |
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| T |
52004184 |
tactcctatatgtattagttatgcaaatttaagtgctaccttcaatggatataagagtttgaaatgagattcacactctatttttaagttatgtaatgat |
52004283 |
T |
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| Q |
125 |
gaaattaaactcaatgtaaaaattcaatatggtatttatctatcctttatattcatataccaagcttaatagtgatacgtctccataaagctgattttgt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52004284 |
gaaattaaactcaatgtaaaaattcaatatggtatttatctatcctttatattcatataccaagcttaatagtgatacgtctccataaagctgattttgt |
52004383 |
T |
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| Q |
225 |
aaaaatagttagacaaatatataaatttaatatatat |
261 |
Q |
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| T |
52004384 |
aaaaatagttagacaaatatataaatttaatatatat |
52004420 |
T |
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