View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_high_29 (Length: 255)
Name: NF6561_high_29
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 6808080 - 6808288
Alignment:
| Q |
32 |
ctttcaacgttgctttatatttggattgtattctttggcttcttaggtttgttacacacagtgcgtattattatttggaaaattaatgattactatctca |
131 |
Q |
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| T |
6808080 |
ctttcaacggtgcttaaaatttggattggattgttttccatctcgggtttgttactcactctgcgtattcttatttggacaattaatgattactatctca |
6808179 |
T |
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| Q |
132 |
ataaaggtgaaggtcagtcaaaaggaaaccattccaccgaagattccaaccgcaagatttgatcgtacaatctttaattacgactataattagtgtgcta |
231 |
Q |
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| T |
6808180 |
ataaaggtgaaggtcaatcaaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatcttcaattacgactataattagtgtgcta |
6808279 |
T |
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| Q |
232 |
ggtgttgag |
240 |
Q |
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||||||||| |
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| T |
6808280 |
ggtgttgag |
6808288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 6634056 - 6634150
Alignment:
| Q |
17 |
attaatatggatttgctttcaacgttgctttatatttggattgtattctttggcttcttaggtttgttacacacagtgcgtattattatttggaa |
111 |
Q |
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| T |
6634056 |
attaatatggatttgctttcaacgttgctttatatttggattgtattctttggcttcttaggtttgttacccacagtgcgtattattatttggaa |
6634150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 6636336 - 6636451
Alignment:
| Q |
129 |
tcaataaaggtgaaggtcagtcaaaaggaaaccattccaccgaagattccaaccgcaagatttgatcgtacaatctttaattacgactataattagtgtg |
228 |
Q |
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| T |
6636336 |
tcaataaaggtgaaggtcagtcaaaaggaaaccactccaccgaagattccacactcttgatttgatcgtgcaatctttaattacgactataattagtgtg |
6636435 |
T |
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| Q |
229 |
ctaggtgttgagtata |
244 |
Q |
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||| | ||||||||| |
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| T |
6636436 |
ctatgcattgagtata |
6636451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 6632850 - 6633066
Alignment:
| Q |
24 |
tggatttgctttcaacgttgctttatatttggattgtattctttggcttcttaggtttgttacacacagtgcgtattattatttggaaaattaatgatta |
123 |
Q |
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||||||| |||||||||||||||||||||||||| | ||| ||| ||||| |||||||||| |||| ||||||||||||||||| ||||| ||||| |
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| T |
6632850 |
tggattttctttcaacgttgctttatatttggatgggattgttttccttctcgggtttgttactcacactgcgtattattatttggggaattagtgattt |
6632949 |
T |
|
| Q |
124 |
ctatctcaataaaggtgaaggtcagtcaaaaggaaac--cattccaccgaagattccaaccgcaagatttgatcgtacaatctttaattacgactataat |
221 |
Q |
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| T |
6632950 |
c---ctcaataaacgtgaaggtaa---aaaggcaaacagaactccaacaaagactccaaccccttgatttaatcgtacaatctttaatttcgactataat |
6633043 |
T |
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| Q |
222 |
tagtgtgctaggtgttgagtata |
244 |
Q |
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||||||| ||| ||||||||||| |
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| T |
6633044 |
tagtgtgttagatgttgagtata |
6633066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 6836019 - 6836224
Alignment:
| Q |
32 |
ctttcaacgttgctttatatttggattgtattctttggcttcttaggtttgttacacacagtgcgtattattatttggaaaattaatgattactatctca |
131 |
Q |
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|||||||| |||||| ||||||||||| ||| ||| |||| ||||| |||| |||| ||||||||||||||||| ||||| ||||| | ||| |
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| T |
6836019 |
ctttcaacattgcttcgtatttggattggattgttttctttctcgggtttcttactcacactgcgtattattatttggggaattagtgatttcg---tca |
6836115 |
T |
|
| Q |
132 |
ataaaggtgaaggtcagtcaaaaggaaaccattccaccgaagattccaaccgcaagatttgatcgtacaatctttaattacgactataattagtgtgcta |
231 |
Q |
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| T |
6836116 |
aaaaaggtgaatgtaa----aaaggcaaccactccaatgatgattgcacccgcttgatttgattgtacaatctttaattacgactataattagtgtgtta |
6836211 |
T |
|
| Q |
232 |
ggtgttgagtata |
244 |
Q |
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|||||||| |||| |
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| T |
6836212 |
ggtgttgaatata |
6836224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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