View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_3 (Length: 854)

Name: NF6561_high_3
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_3
NF6561_high_3
[»] chr4 (3 HSPs)
chr4 (292-844)||(4674048-4674589)
chr4 (20-294)||(4674646-4674919)
chr4 (576-682)||(51626285-51626391)
[»] chr1 (3 HSPs)
chr1 (610-702)||(28724708-28724800)
chr1 (575-682)||(18428120-18428226)
chr1 (638-671)||(19238840-19238873)
[»] chr3 (5 HSPs)
chr3 (575-678)||(27763781-27763884)
chr3 (575-687)||(1642657-1642769)
chr3 (600-700)||(22288273-22288373)
chr3 (634-706)||(22288553-22288625)
chr3 (587-697)||(39950253-39950363)
[»] chr5 (3 HSPs)
chr5 (575-682)||(10591983-10592090)
chr5 (600-671)||(29553606-29553677)
chr5 (568-670)||(5051657-5051760)
[»] chr7 (1 HSPs)
chr7 (599-700)||(45778902-45779003)
[»] chr6 (3 HSPs)
chr6 (599-682)||(28099299-28099382)
chr6 (604-671)||(17457073-17457140)
chr6 (610-671)||(12411215-12411276)
[»] chr8 (2 HSPs)
chr8 (599-682)||(2743989-2744072)
chr8 (652-733)||(27121805-27121886)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 292 - 844
Target Start/End: Complemental strand, 4674589 - 4674048
Alignment:
Q  292 tatttgttaagattttttcttaaaaaacttttgtttgtacaaacataaccacttattaaagttttcatctgtttgttactttctttgaagagaatctgaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674589 tatttgttaagattttttcttaaaaaacttttgtttgtacaaacataaccacttattaaagttttcatctgtttgttactttctttgaagagaatctgaa 4674490  T
Q  392 gcactctaaaaagattttcattatggtatggtagaaacacactaaatagtccctgcatttcataataatatataatttttaatatcacctcnnnnnnnnn 491  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             
T  4674489 gcactctaaaaagattttcattat-----ggtagaaacacactaaatagtccctgcatttcataaaaatatataatttttaatatcacctcaaaaacgaa 4674395  T
Q  492 nnnncaaacagatttatatctacacatagttgactgttagactctttagagnnnnnnnnnnnnngataacacataattttctagtgtaaatctgatatcc 591  Q
        |||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||||||    
T  4674394 aaaacaaacagattaatatctacacatagttgactgttagactctttagagaaaaaggaaaaaagataacacataattttctagtgtaaatatgatatcc 4674295  T
Q  592 tctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaact 691  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||| |||||||    
T  4674294 tctgcatgcaactgcagtgattaatcccttaagcattgcaggatttaaatggacgacaaactctttctaaaaattttaacaccattgcatgtccaaaact 4674195  T
Q  692 gaattcgaatctaaatcattggttaaactagaaaaaacccgtatc-atcccatccaaacgcttctttgctagataatacataattaatcacacaaaaatg 790  Q
     |||||||| | |||||||||||||||||| ||||||     ||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  4674194 aaattcgaacccaaatcattggttaaactaaaaaaaa-----atcaatcacatccaaacgct--tttgctagataatacataattaatcacacaaaaatg 4674102  T
Q  791 gaattagatattaacaattctgcatataatctatgagccacagccacaggttct 844  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  4674101 gaattagatattaacaattctgcatataatctatgaaccacagccacaagttct 4674048  T

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Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 4674919 - 4674646
Alignment:
Q  20 ttggattaaggattttcctccaatctggcttcttttgtatccgaggatattcctcctccttctgtttctcgtgttgcttaatgaagtatttttccttgca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674919 ttggattaaggattttcctccaatctggcttcttttgtatccgaggatattcctcctccttctgtttctcgtgttgcttaatgaagtatttttccttgca 4674820  T
Q  120 aagggaatcattttggcctgtaaatctgtatatcagtattttnnnnnnnttagttcacattttgcaagtaaccgataccaaattaactaataaagtacac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  4674819 aagggaatcattttggcctgtaaatctgtatatcagtattttcaaaaaattagttcacattttgcaagtaactgatagcaaattaactaataaa-tacac 4674721  T
Q  220 atttgataaacaaactaactaaagaaacatacattcgagactcatgttgacttaagaaatgcatattaaaaatat 294  Q
    |||| ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  4674720 atttaataaataaactaactaaagaaacatacattcgagactctagttgacttaagaaatgcatattaaaaatat 4674646  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 682
Target Start/End: Original strand, 51626285 - 51626391
Alignment:
Q  576 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 675  Q
    |||||||| | ||||||| ||  |||||||| | |||||||| ||  |||| ||  |||| |||||||||| || ||||| ||||||||||||||||| |    
T  51626285 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactg 51626384  T
Q  676 ttgcatg 682  Q
     ||||||    
T  51626385 ctgcatg 51626391  T

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Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 610 - 702
Target Start/End: Complemental strand, 28724800 - 28724708
Alignment:
Q  610 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatc 702  Q
    |||||||||||  | ||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||  |||||||||||||    
T  28724800 gactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatc 28724708  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 682
Target Start/End: Original strand, 18428120 - 18428226
Alignment:
Q  575 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 674  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  || | |||||||||  || ||||| |||||||||||||||||     
T  18428120 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggc-caaatggacagcagactctccctaaaagttttaacact 18428218  T
Q  675 gttgcatg 682  Q
    | ||||||    
T  18428219 gctgcatg 18428226  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 671
Target Start/End: Original strand, 19238840 - 19238873
Alignment:
Q  638 aaatggacgacaaactcttcctaaaagttttaac 671  Q
    |||||||||||||||||| |||||||||||||||    
T  19238840 aaatggacgacaaactctccctaaaagttttaac 19238873  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 678
Target Start/End: Complemental strand, 27763884 - 27763781
Alignment:
Q  575 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 674  Q
    ||||||| | ||||||||||||  |||||||| | |||||||||||  |||||||  ||||||||||||||| || ||||| ||||| |||||||||||     
T  27763884 gtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacact 27763785  T
Q  675 gttg 678  Q
    ||||    
T  27763784 gttg 27763781  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 575 - 687
Target Start/End: Complemental strand, 1642769 - 1642657
Alignment:
Q  575 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 674  Q
    ||||||||| ||||||||| ||  |||||||| |  |||||||||| ||| ||||  |||| ||||||||||  | ||||| |||||||||||||||||     
T  1642769 gtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacg 1642670  T
Q  675 gttgcatgttcaa 687  Q
    | |||||||||||    
T  1642669 gctgcatgttcaa 1642657  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 700
Target Start/End: Complemental strand, 22288373 - 22288273
Alignment:
Q  600 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcga 699  Q
    ||||||||| ||||||| |||| || ||||    |||||||||||||||||  ||| ||||| ||||||||||  |||||||||||||  ||||||||||    
T  22288373 caactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcga 22288274  T
Q  700 a 700  Q
    |    
T  22288273 a 22288273  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 706
Target Start/End: Complemental strand, 22288625 - 22288553
Alignment:
Q  634 actcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaa 706  Q
    ||||||||| |||||||  |||  |||| ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  22288625 actcaaatgtacgacaagttctcactaagagttttagcactgttgcatgttcaaagctgaattcgaacctaaa 22288553  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 587 - 697
Target Start/End: Complemental strand, 39950363 - 39950253
Alignment:
Q  587 tatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttca 686  Q
    ||||||| |||||||||||| | ||||||||| |  |||||||  |||  |||||| |||||| | ||| ||||||| ||||||| | | ||||||| ||    
T  39950363 tatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtcca 39950264  T
Q  687 aaactgaattc 697  Q
    |||||| ||||    
T  39950263 aaactggattc 39950253  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 682
Target Start/End: Complemental strand, 10592090 - 10591983
Alignment:
Q  575 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 674  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  |||||||||||| || || ||||| ||||| |||||||||||     
T  10592090 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacact 10591991  T
Q  675 gttgcatg 682  Q
    | ||||||    
T  10591990 gctgcatg 10591983  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 600 - 671
Target Start/End: Complemental strand, 29553677 - 29553606
Alignment:
Q  600 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 671  Q
    ||||||||| |||||||| ||| ||||||   |||| ||||||||||||||||||| ||||| |||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 670
Target Start/End: Complemental strand, 5051760 - 5051657
Alignment:
Q  568 ttttctagtgtaaatctgatatcctctgcatgcaact-gcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagtt 666  Q
    |||| ||||||||||| |  |||||||||| |||||| ||||  ||||||| ||  |||||||   ||||||||||||||||||| ||| ||||||| ||    
T  5051760 ttttttagtgtaaatcgggcatcctctgcacgcaacttgcagaaactaatctctcgagcattgtgagactcaaatggacgacaaagtctccctaaaattt 5051661  T
Q  667 ttaa 670  Q
    ||||    
T  5051660 ttaa 5051657  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 700
Target Start/End: Complemental strand, 45779003 - 45778902
Alignment:
Q  599 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcg 698  Q
    |||||||| | |||||||||||  || ||||   |||||||| |||||||||||  | |||||||| ||||||||||||| |||| ||| ||||||||||    
T  45779003 gcaactgcggagactaatccctcgagtattgtgagactcaaacggacgacaaacaatccctaaaagctttaacaccgttgtatgtccaagactgaattcg 45778904  T
Q  699 aa 700  Q
    ||    
T  45778903 aa 45778902  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 599 - 682
Target Start/End: Complemental strand, 28099382 - 28099299
Alignment:
Q  599 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 682  Q
    |||||||| | |||||||||||  ||||||   | |||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  28099382 gcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatg 28099299  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 671
Target Start/End: Original strand, 17457073 - 17457140
Alignment:
Q  604 tgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 671  Q
    ||||| ||||||||| ||||||||||  || || |||| | |||||| ||||||||||||||||||||    
T  17457073 tgcagagactaatcctttaagcattgtgggtcttaaataggcgacaagctcttcctaaaagttttaac 17457140  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 671
Target Start/End: Complemental strand, 12411276 - 12411215
Alignment:
Q  610 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 671  Q
    ||||||||||| ||||||||  ||||| |||||| || || ||||||||||| |||||||||    
T  12411276 gactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaac 12411215  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 682
Target Start/End: Complemental strand, 2744072 - 2743989
Alignment:
Q  599 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 682  Q
    |||||||| | |||||||||||  |||||||  |||| |||||||||||||  |||| ||||| ||||||||||| | ||||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 733
Target Start/End: Original strand, 27121805 - 27121886
Alignment:
Q  652 ctcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaatcattggttaaactagaaaaaacccgt 733  Q
    |||||||||||||||||||||| |||||||| | ||| ||| ||||||| | | | | |||||||| |||||| | ||||||    
T  27121805 ctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgt 27121886  T

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