View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_high_31 (Length: 252)
Name: NF6561_high_31
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2834918 - 2834674
Alignment:
| Q |
1 |
tagctgtaaatttaaatgcctagttgatttaaagtaaatctggacgatatgtatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaac |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2834918 |
tagctgtaaatttaaacgcctagttgatttaaagtaaatctggacgatatgtatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaac |
2834819 |
T |
|
| Q |
101 |
tatttatttaaaaattcaaagttagacacttcgctctactatcgnnnnnnnngctaaccaagatcgatgctactatcgttttgaagccnnnnnnngtctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2834818 |
tatttatttaaaaattcaaagttagacacttcgctctactatcgttttttttgctaaccaagatcgatgctactatcgttttgaagccaaaaaaagtctt |
2834719 |
T |
|
| Q |
201 |
atactatctaaactggttgcctgcaccgggcctgatttcatctct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2834718 |
atactatctaaactggttgcctgcaccgggcctgatttcagctct |
2834674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 2821440 - 2821533
Alignment:
| Q |
2 |
agctgtaaatttaaatgcctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcatccatccatcatttc |
91 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||| ||| || |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
2821440 |
agctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccacccatcatttc |
2821533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 2834666 - 2834621
Alignment:
| Q |
89 |
ttcctcaccaactatttatttaaaaattcaaagttagacacttcgc |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2834666 |
ttcctcgccaactatttatttaaaaattcaaagtcagacacttcgc |
2834621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 2810124 - 2810169
Alignment:
| Q |
92 |
ctcaccaactatttatttaaaaattcaaagttagacacttcgctct |
137 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
2810124 |
ctcaccgactatttatttataaattcaaagtcatacacttcgctct |
2810169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University