View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_35 (Length: 243)

Name: NF6561_high_35
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_35
NF6561_high_35
[»] chr2 (4 HSPs)
chr2 (1-243)||(39748477-39748719)
chr2 (13-243)||(27087689-27087919)
chr2 (27-243)||(26978764-26978980)
chr2 (26-243)||(27020457-27020674)
[»] chr6 (1 HSPs)
chr6 (26-243)||(34681159-34681376)
[»] chr8 (1 HSPs)
chr8 (26-243)||(11632312-11632529)
[»] chr4 (1 HSPs)
chr4 (183-243)||(1959758-1959818)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39748477 - 39748719
Alignment:
Q  1 tcaaatgtatggcatttaatcaactttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtcc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748477 tcaaatttatggcatttaatcaactttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtcc 39748576  T
Q  101 ttctacaagttgatgctgtttatctaaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatct 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39748577 ttctacaagttgatgttgtttatctaaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatct 39748676  T
Q  201 ccaactttgattaccttattctcaatctcaatggcttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39748677 ccaactttgattaccttattctcaatctcaatggcttcatctc 39748719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 27087689 - 27087919
Alignment:
Q  13 catttaatcaactttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtccttctacaagttg 112  Q
    ||||||| |||  ||||||||||||||||| |||||||| ||||||||| ||||||||||||||   ||||||||||||||||||||| |||| |||||     
T  27087689 catttaaccaatcttacctgctttcctctaatgctttgagttgaacctcgttcaatgaatttagtcccttgagtgccgtggattgtccgtctaaaagttc 27087788  T
Q  113 atgctgtttatctaaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatctccaactttgatt 212  Q
     || ||||| ||||| || | |||||||| |||| |||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||     
T  27087789 ttgttgtttttctaaggaaacccctgccatatttccaatatcttccgctttggtttgtagagtgttcatctttgatgacatagcatctccaactttgatc 27087888  T
Q  213 accttattctcaatctcaatggcttcatctc 243  Q
    || | ||| ||||||||||||| ||||||||    
T  27087889 acttcattttcaatctcaatggtttcatctc 27087919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 26978980 - 26978764
Alignment:
Q  27 tacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtccttctacaagttgatgctgtttatcta 126  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||   |||||| || ||||||||||| |||| |||||  || ||||| ||||    
T  26978980 tacctgctttcctccagtgctttgaattgaacctcgttcaatgaatttagtcccttgagcgcggtggattgtccgtctaaaagttcttgttgtttttcta 26978881  T
Q  127 aagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatctccaactttgattaccttattctcaat 226  Q
    | || | |||||||| |||| |||||||||| |||||  |||||||| ||||||||||||||||||||| || |||||||||||| || | |||||||||    
T  26978880 aggaaacccctgccatatttccaatatcttccgccttagtttgtagagtgttcatctttgatgacatagtatttccaactttgataacttcattctcaat 26978781  T
Q  227 ctcaatggcttcatctc 243  Q
    |||||||||||||||||    
T  26978780 ctcaatggcttcatctc 26978764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 27020674 - 27020457
Alignment:
Q  26 ttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtccttctacaagttgatgctgtttatct 125  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||   ||||||||| |||||||| || |||| ||||| ||| ||||| |||    
T  27020674 ttacctgctttcctctaatgctttgaattgaacctcgttcaatgaatttagtcccttgagtgctgtggattgcccatctaaaagttcatgttgtttttct 27020575  T
Q  126 aaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatctccaactttgattaccttattctcaa 225  Q
    || || | || ||| | |||| |||||||||| || ||| |||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||    
T  27020574 aaggaaacccttgcaatatttccaatatcttccgctttggtttgtagagtgttcatctttgatgacatagtatctccaactttgataacttcattctcaa 27020475  T
Q  226 tctcaatggcttcatctc 243  Q
    ||||||||||||| ||||    
T  27020474 tctcaatggcttcctctc 27020457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 34681376 - 34681159
Alignment:
Q  26 ttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtccttctacaagttgatgctgtttatct 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||| |||| |||||  || ||||| |||    
T  34681376 ttacctgctttcctctagtgctttgaattgaacctcgttcaatgaatttagtcccttgagtgccgtggattgtccgtctaaaagttcttgttgtttttct 34681277  T
Q  126 aaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatctccaactttgattaccttattctcaa 225  Q
    || || | |||||||| |||| |||||||||| |||||  |||||||| ||||||||||||||||||||| || |||||||||||| || | ||||||||    
T  34681276 aaggaaacccctgccatatttccaatatcttccgccttagtttgtagagtgttcatctttgatgacatagtatttccaactttgataacttcattctcaa 34681177  T
Q  226 tctcaatggcttcatctc 243  Q
    ||||||||||||||||||    
T  34681176 tctcaatggcttcatctc 34681159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 11632529 - 11632312
Alignment:
Q  26 ttacctgctttcctctagtgctttgaattgaacctcattcaatgaatttaggaacttgagtgccgtggattgtccttctacaagttgatgctgtttatct 125  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||||||   | |||||||||||||||||| |||| |||||  || |||||  ||    
T  11632529 ttacctgctctcctctagtgctttgaattgaacctcgttcaacgaatttaggccttcgagtgccgtggattgtccatctaaaagttcttgttgttttcct 11632430  T
Q  126 aaagagatccctgccacattttcaatatcttcagccttgctttgtagaatgttcatctttgatgacatagcatctccaactttgattaccttattctcaa 225  Q
    || || ||||| |||| |||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| || | ||| ||||    
T  11632429 aaggaaatcccagccatatttccaatatcttcagctttgctttgtagcgtgttcatctttgatgacatagcatctccaactttgatcacttcattttcaa 11632330  T
Q  226 tctcaatggcttcatctc 243  Q
    ||||||||||||||||||    
T  11632329 tctcaatggcttcatctc 11632312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 1959758 - 1959818
Alignment:
Q  183 tttgatgacatagcatctccaactttgattaccttattctcaatctcaatggcttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1959758 tttgatgacatagcatctccaactttgattaccttattctcaatttcaatggcttcatctc 1959818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University