View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_38 (Length: 236)

Name: NF6561_high_38
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_38
NF6561_high_38
[»] chr3 (2 HSPs)
chr3 (11-236)||(12404224-12404459)
chr3 (113-198)||(3041606-3041691)
[»] chr2 (2 HSPs)
chr2 (143-200)||(42467885-42467942)
chr2 (132-177)||(37494733-37494778)
[»] chr1 (3 HSPs)
chr1 (143-198)||(19808751-19808806)
chr1 (132-175)||(1327620-1327663)
chr1 (132-194)||(4364244-4364306)
[»] chr5 (1 HSPs)
chr5 (130-198)||(4483922-4483990)
[»] chr8 (3 HSPs)
chr8 (127-160)||(32817217-32817250)
chr8 (144-198)||(32409870-32409924)
chr8 (203-236)||(44961976-44962009)
[»] chr4 (2 HSPs)
chr4 (136-198)||(5078927-5078989)
chr4 (111-173)||(6986768-6986830)
[»] chr6 (1 HSPs)
chr6 (132-185)||(7712351-7712404)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 12404459 - 12404224
Alignment:
Q  11 catcatagcaagataacaggaaaccaagatgaccattctacaacaccaacaccaaaattgtaacatgtgagaaaacactattcatt----------gaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    
T  12404459 catcatagcaagataacaggaaaccaagatgaccattctacaacaccaacaccaaaattgtaacatgtgagaaaacactattcattaaattccattgaaa 12404360  T
Q  101 atgttgtatcattttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12404359 atgttgtatcattttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatact 12404260  T
Q  201 aactgtgacaccttgttatattcattatccatccac 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  12404259 aactgtgacaccttgttatattcattatccatccac 12404224  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 3041691 - 3041606
Alignment:
Q  113 tttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 198  Q
    ||||||||||||| |||| ||||  | || ||||| || ||||||||| || ||||| ||||||||| |||||  |||||||||||    
T  3041691 tttgacacaaatttgaaaacaaaaatcgacaacaacttggatggttaacaccgttcacatatgtggttaattacatttagtggatg 3041606  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 42467942 - 42467885
Alignment:
Q  143 aacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatgct 200  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  42467942 aacaattcagatggttaatgcagttcaaatatgtggttaattatgtttagtggatgct 42467885  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 37494733 - 37494778
Alignment:
Q  132 caaattttgataacaatttagatggttaatacagttcaaatatgtg 177  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||    
T  37494733 caaatttcgataacaatttggatggttaatgcagttcaaatatgtg 37494778  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 19808751 - 19808806
Alignment:
Q  143 aacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 198  Q
    |||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||    
T  19808751 aacaatttggatggttaacaccgttcaaatatgtggtaaattacgtttagtggatg 19808806  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 1327620 - 1327663
Alignment:
Q  132 caaattttgataacaatttagatggttaatacagttcaaatatg 175  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  1327620 caaattttgataacaaattagatggttaacacagttcaactatg 1327663  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 4364244 - 4364306
Alignment:
Q  132 caaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtg 194  Q
    |||||||||| |||||||||||| |||||  || ||||||||||| || ||||||||| ||||    
T  4364244 caaattttgacaacaatttagatagttaacgcaattcaaatatgtagttaattatgttcagtg 4364306  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 4483922 - 4483990
Alignment:
Q  130 atcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 198  Q
    |||||||||||| ||||||| | |||||||| ||||||||||| |||||  ||||||||| ||||||||    
T  4483922 atcaaattttgacaacaattgacatggttaacacagttcaaatgtgtggctaattatgttcagtggatg 4483990  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 32817217 - 32817250
Alignment:
Q  127 gaaatcaaattttgataacaatttagatggttaa 160  Q
    ||||||||||||||||||||||||||||||||||    
T  32817217 gaaatcaaattttgataacaatttagatggttaa 32817250  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 32409924 - 32409870
Alignment:
Q  144 acaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 198  Q
    |||| |||||||||||||||| |||||||||||| |   ||||||||||||||||    
T  32409924 acaaattagatggttaatacaattcaaatatgtgcttgcttatgtttagtggatg 32409870  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 44961976 - 44962009
Alignment:
Q  203 ctgtgacaccttgttatattcattatccatccac 236  Q
    |||||||||||| |||||||||||||||||||||    
T  44961976 ctgtgacaccttattatattcattatccatccac 44962009  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 5078927 - 5078989
Alignment:
Q  136 ttttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 198  Q
    |||||| |||||||| |||||||||| |||||||||||| |||| |||||  |||||| ||||    
T  5078927 ttttgacaacaatttggatggttaatgcagttcaaatatatggttaattacatttagtagatg 5078989  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 6986830 - 6986768
Alignment:
Q  111 attttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaata 173  Q
    ||||||||| ||||| || | ||||||| || || |||||||||||||||| |||||||||||    
T  6986830 attttgacataaattagacaacaaatttcgaaaataatttagatggttaatgcagttcaaata 6986768  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 7712404 - 7712351
Alignment:
Q  132 caaattttgataacaatttagatggttaatacagttcaaatatgtggtaaatta 185  Q
    ||||||| || |||| ||||||||||||| | |||||||||||||||| |||||    
T  7712404 caaatttcgacaacagtttagatggttaacatagttcaaatatgtggttaatta 7712351  T

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