View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_high_42 (Length: 213)
Name: NF6561_high_42
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 2623505 - 2623324
Alignment:
| Q |
15 |
aatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2623505 |
aatatacatcacaaaattcaatttttcctattaactttatagctttgtgaccttctatttcatcaggcttgattttcgtatacctatcaaggattgtgaa |
2623406 |
T |
|
| Q |
115 |
aaccgacccaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttccagtagttacc |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
2623405 |
aaccgacgcaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcgataacttttccggtacttacc |
2623324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 2591961 - 2591780
Alignment:
| Q |
15 |
aatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaa |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
2591961 |
aataaacatcacaaaattcaatttttcctattaacttttcagctttgtaaccttctatttcatcaggatcaattttcgtatacctatcaaggattgtgaa |
2591862 |
T |
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| Q |
115 |
aaccgacccaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttccagtagttacc |
196 |
Q |
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| T |
2591861 |
aaccgattcaatggcatcggaacctttagcaagatcattcgtcatgctaccagcatcagcaattacttttccggtagttacc |
2591780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 2596868 - 2597049
Alignment:
| Q |
15 |
aatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaa |
114 |
Q |
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|||||||||||| || |||||||||||||||||| |||| |||| |||||||||||| ||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
2596868 |
aatatacatcacgaagttcaatttttcctattaatttttcagctctgtaaccttctaaatcatcgggctcgatttttgtatacctatcgaggattgtgaa |
2596967 |
T |
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| Q |
115 |
aaccgacccaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttccagtagttacc |
196 |
Q |
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|||||| |||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||||||| |||| ||| ||||| |
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| T |
2596968 |
aaccgatccaaccgcattagagcctttagcaagatcattcgtcaagctaccggcatcagcaataactcttcctgtacttacc |
2597049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 2672684 - 2672865
Alignment:
| Q |
15 |
aatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaa |
114 |
Q |
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|||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| |||||| |||| ||||| ||||||| ||| |||| || || |
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| T |
2672684 |
aatatacatcacgaagttcaatttttcctattaacttttcagcttggtaactttctaaatcatcaggctctatttttgtataccgatcgaggactgcaaa |
2672783 |
T |
|
| Q |
115 |
aaccgacccaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttccagtagttacc |
196 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||| ||||| |
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| T |
2672784 |
aaccgatccaacggcatcagagcctttagcaagatcatttgtcatgctacctgcatcagcaataactcttcctgtacttacc |
2672865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 2641540 - 2641695
Alignment:
| Q |
31 |
ttcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaaaaccgacccaatggca |
130 |
Q |
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||||||||| ||||| || ||||| |||||||||||||| | |||||| |||||||| | ||||||||||| ||||||| ||||||||| |||| ||| |
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| T |
2641540 |
ttcaattttccctatcaaatttttggctttgtaaccttcaaaatcatcaggctcgattgttgtatacctatcgaggattgcgaaaaccgatccaactgca |
2641639 |
T |
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| Q |
131 |
tcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttcc |
186 |
Q |
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| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||| |||| |
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| T |
2641640 |
ttagagcctttagcaagatcatttgtcatgctaccggcatctgcaataactcttcc |
2641695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 2569313 - 2569490
Alignment:
| Q |
19 |
tacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaaaacc |
118 |
Q |
| |
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||||||| ||| ||||||| |||||||||| |||| ||||||||||||| | |||| ||| |||||| ||||||||||| || |||| ||||| |
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| T |
2569313 |
tacatcaaaaagttcaattattcctattaatttttcagctttgtaacctctcaagtcattgggcttgatttttgtatacctatcgagaattgcaaaaact |
2569412 |
T |
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| Q |
119 |
gacccaatggcatcagaacctttagcaagatcattcgtcatgctaccagcatcagcaataacttttccagtagttacc |
196 |
Q |
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|| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| ||||| |
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| T |
2569413 |
gatccaatggcatcagagcctttagcaagatcactcgtcatgctaccggcatcagcaataactcttcctgtacttacc |
2569490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 2440002 - 2439840
Alignment:
| Q |
28 |
aaattcaatttttcctattaactttttagctttgtaaccttctatttcatcatgctcgattttcgtatacctatcaaggattgtgaaaaccgacccaatg |
127 |
Q |
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|||| ||||||||||||| ||||||| |||| || ||||||||| || || || |||||||||||||||||||| |||| ||||| || | | | |
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| T |
2440002 |
aaatacaatttttcctatcaacttttcagctctgaaaccttctaagtcgtccgacttaattttcgtatacctatcaagaattgcaaaaactgatctgacg |
2439903 |
T |
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| Q |
128 |
gcatcagaacctttagcaagatcattcgtcatgctac---cagcatcagcaataacttttcca |
187 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
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| T |
2439902 |
gcatcagaacctttagcaagatcattagtcatgctactcgcagcatctgcaataacttttcca |
2439840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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