View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_5 (Length: 591)

Name: NF6561_high_5
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_5
NF6561_high_5
[»] chr3 (10 HSPs)
chr3 (19-479)||(53286405-53286865)
chr3 (19-207)||(54139697-54139886)
chr3 (19-207)||(52808129-52808317)
chr3 (368-475)||(39759403-39759512)
chr3 (393-471)||(43823478-43823557)
chr3 (239-331)||(39759242-39759334)
chr3 (280-369)||(43067921-43068011)
chr3 (272-369)||(43823614-43823711)
chr3 (55-188)||(1924162-1924293)
chr3 (210-248)||(32574628-32574666)
[»] chr6 (3 HSPs)
chr6 (21-479)||(11842874-11843358)
chr6 (368-475)||(3288486-3288595)
chr6 (239-327)||(3288658-3288746)
[»] chr7 (8 HSPs)
chr7 (368-479)||(48826802-48826914)
chr7 (368-475)||(33516424-33516533)
chr7 (391-475)||(43613833-43613918)
chr7 (373-471)||(46067201-46067301)
chr7 (208-332)||(48826632-48826755)
chr7 (232-331)||(11591310-11591409)
chr7 (368-473)||(11591464-11591570)
chr7 (240-331)||(33516591-33516682)
[»] chr4 (19 HSPs)
chr4 (18-174)||(48431808-48431964)
chr4 (355-479)||(48236161-48236288)
chr4 (368-475)||(41055478-41055587)
chr4 (368-475)||(55682033-55682142)
chr4 (367-475)||(374949-375059)
chr4 (368-475)||(7199255-7199364)
chr4 (368-471)||(51470076-51470181)
chr4 (368-479)||(49811683-49811796)
chr4 (208-331)||(7199063-7199186)
chr4 (391-475)||(37517466-37517550)
chr4 (391-475)||(37521682-37521766)
chr4 (239-331)||(20790102-20790194)
chr4 (239-331)||(37517633-37517725)
chr4 (239-331)||(37521849-37521941)
chr4 (232-331)||(51470250-51470349)
chr4 (208-258)||(11944923-11944973)
chr4 (272-330)||(55681905-55681963)
chr4 (254-322)||(375115-375183)
chr4 (272-319)||(42491054-42491101)
[»] chr2 (6 HSPs)
chr2 (242-385)||(21472702-21472845)
chr2 (368-474)||(33458361-33458469)
chr2 (272-369)||(33458500-33458597)
chr2 (368-471)||(34478944-34479049)
chr2 (208-309)||(17903658-17903759)
chr2 (280-331)||(34479118-34479169)
[»] chr1 (15 HSPs)
chr1 (368-475)||(42872601-42872710)
chr1 (368-475)||(52004838-52004947)
chr1 (368-475)||(52539329-52539438)
chr1 (237-339)||(42872772-42872874)
chr1 (368-475)||(20010724-20010833)
chr1 (30-147)||(23707176-23707293)
chr1 (131-207)||(23619277-23619353)
chr1 (131-207)||(23650622-23650698)
chr1 (131-207)||(23736058-23736134)
chr1 (239-369)||(52004978-52005108)
chr1 (239-322)||(52539190-52539273)
chr1 (276-318)||(52789510-52789552)
chr1 (208-309)||(14620674-14620775)
chr1 (276-319)||(36392452-36392495)
chr1 (276-328)||(20010905-20010957)
[»] scaffold0368 (2 HSPs)
scaffold0368 (393-475)||(7905-7988)
scaffold0368 (237-339)||(7715-7817)
[»] scaffold0101 (2 HSPs)
scaffold0101 (368-475)||(18740-18849)
scaffold0101 (208-331)||(18548-18671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (391-475)||(23-108)
[»] chr8 (3 HSPs)
chr8 (368-475)||(38566624-38566733)
chr8 (239-369)||(38566463-38566593)
chr8 (208-258)||(23728686-23728736)
[»] chr5 (6 HSPs)
chr5 (391-475)||(37369639-37369724)
chr5 (368-471)||(41992333-41992438)
chr5 (239-369)||(37369779-37369909)
chr5 (239-322)||(41992194-41992277)
chr5 (207-258)||(8595029-8595080)
chr5 (239-309)||(41020474-41020544)


Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 53286865 - 53286405
Alignment:
Q  19 attctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286865 attctaaaggatcaactggaaagctaatatctagtttacttgactgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaatt 53286766  T
Q  119 ccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacattgttgtcaata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53286765 ccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacactgttgtcaata 53286666  T
Q  219 gcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286665 gcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgg 53286566  T
Q  319 gcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaacta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286565 gcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaacta 53286466  T
Q  419 ttactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtacaaac 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286465 ttactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtacaaac 53286405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 54139886 - 54139697
Alignment:
Q  19 attctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaatt 118  Q
    |||| ||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||| |||||||||||||| |||| |||||| | ||||||||||||    
T  54139886 attcaaaaggatcaaccggaacgctaataactagtttacttgactgcgattcattttgacattccttatacaaattattcagaaagccggagtttcaatt 54139787  T
Q  119 ccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaactt-atgtgttctacat 207  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  54139786 ccaatagcaagacaattcattacactcgaagcctattttaatttcttaaaattcagcgtgaacttaaccttaacttaatgtgttctacat 54139697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 52808129 - 52808317
Alignment:
Q  19 attctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaatt 118  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||  ||||||| ||| ||||||||| |||| | ||||| ||||| ||||||||| ||    
T  52808129 attctaaaggatcaatttgaaagctaataactagtttacttgattaagattcattttgacattccttaaacaattcatgcaaaaacctggagtttcattt 52808228  T
Q  119 ccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacat 207  Q
    ||||| || || ||||| |||||||| ||  ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  52808229 ccaattgccagacaattcattacacttgagacctattttaatctcttcaaattcagtgtgaacttaaccttaacttatgtgttctacat 52808317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 39759403 - 39759512
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  39759403 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 39759502  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  39759503 ttcatcgtac 39759512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 43823557 - 43823478
Alignment:
Q  393 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatc 471  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  43823557 tttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatc 43823478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 39759242 - 39759334
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    |||||||||||||| |||||| ||  ||| |  |||||||  |||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  39759242 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtactccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 39759334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 43067921 - 43068011
Alignment:
Q  280 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 369  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||||||||   |||||  || |||| ||||||||||||| |||||||    
T  43067921 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgctttt 43068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 43823711 - 43823614
Alignment:
Q  272 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 369  Q
    ||||||| ||||||| ||||||| |||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  43823711 gacacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 43823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 1924293 - 1924162
Alignment:
Q  55 tacttgattgcgattcatcttgtcatt-ccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagccta 153  Q
    |||||||||| ||||||| ||| |||| ||||| |||| | ||||||||||  ||  ||||||||||||  || || ||||| ||||||||| |||||||    
T  1924293 tacttgattgtgattcattttgacattaccttaaacaattcatgcagaaactcgg--tttcaattccaactgcgagacaattaattacactcaaagccta 1924196  T
Q  154 ttttaatttcttaaaattcag-tgtgaacttaacct 188  Q
    |||| || |||  |||||||| ||||||||||||||    
T  1924195 ttttcatctct--aaattcagctgtgaacttaacct 1924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 32574666 - 32574628
Alignment:
Q  210 ttgtcaatagcggccgctaacagcgctatcgcggcgcgg 248  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  32574666 ttgtcaatagcggccgctaccggcgctatcgcggcgcgg 32574628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 11842874 - 11843358
Alignment:
Q  21 tctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcatt------------------ccttatacaacttatgcagaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||                  |||||||||||||||||||||    
T  11842874 tctaaaggatcaactggaaagctaatatctagtttacttgactgcaattcatcttgacattccttttcattttgacattccttatacaacttatgcagaa 11842973  T
Q  103 accaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttc 202  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11842974 accaggagtttcaattccaatagcaagacaattcattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaatttatgtgttc 11843073  T
Q  203 tacattgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggag 302  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11843074 tacactgttgtcaatagcggccgctaacagcgctatcgtggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggag 11843173  T
Q  303 aaagcggctgaag--------cgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttaggccatt 394  Q
    ||||| |||||||        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11843174 aaagcagctgaagcgggcagccgggcaccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttaggccatt 11843273  T
Q  395 tttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtacaaac 479  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11843274 tttgtaatttttaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacacaacttcttcatcgtacaaac 11843358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 3288595 - 3288486
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  3288595 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 3288496  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  3288495 ttcatcgtac 3288486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 3288746 - 3288658
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattg 327  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| ||||||| ||   ||||||||||||||||| |||||||||||| ||||    
T  3288746 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgctccgcgtttggagaaagcggatgaagcgggcgcaattg 3288658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 368 - 479
Target Start/End: Original strand, 48826802 - 48826914
Alignment:
Q  368 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttct 466  Q
    |||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  48826802 ttcacttaaaaccgttttaaagtcatttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaatacaacttct 48826901  T
Q  467 tcatcgtacaaac 479  Q
    |||||||||||||    
T  48826902 tcatcgtacaaac 48826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 33516533 - 33516424
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33516533 ttcatttaaaaccgttttaagggtcattttggtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33516434  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  33516433 ttcatcgtac 33516424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 43613833 - 43613918
Alignment:
Q  391 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  43613833 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 43613918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 46067301 - 46067201
Alignment:
Q  373 ttaaaaccgtttttag-gccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcat 470  Q
    ||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||    
T  46067301 ttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcat 46067202  T
Q  471 c 471  Q
    |    
T  46067201 c 46067201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 48826632 - 48826755
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 307  Q
    ||||||||||||||||||||| | ||| |   |||||| |||||| |||||| ||||| |||   |  || |||||||||||||||||||||||||||||    
T  48826632 tgttgtcaatagcggccgctaccggcg-tggagcggcgtggagcggccaaaaacagtagaacgcaatgcaacgctccaaggcggagcgtttggagaaagc 48826730  T
Q  308 ggctgaagcgggcgccattgcgggt 332  Q
    ||||||||||||||| |||||||||    
T  48826731 ggctgaagcgggcgcaattgcgggt 48826755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 232 - 331
Target Start/End: Original strand, 11591310 - 11591409
Alignment:
Q  232 gcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    |||| |||||||||||||||| |||||| ||  ||| |  ||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  11591310 gcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 11591409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 368 - 473
Target Start/End: Original strand, 11591464 - 11591570
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||  || || |||||||    
T  11591464 ttcatttaaaaccgttttaagggtcatttttgtaatttttaaaaccctaactattactcttctcca-cagaaccaaatacacagccacagactcaacttc 11591562  T
Q  466 ttcatcgt 473  Q
    ||| ||||    
T  11591563 ttcttcgt 11591570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 331
Target Start/End: Complemental strand, 33516682 - 33516591
Alignment:
Q  240 gcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    ||||||||||||| |||||| ||  ||| |  ||||||| ||| ||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  33516682 gcggcgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcggg 33516591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 48431808 - 48431964
Alignment:
Q  18 aattctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaat 117  Q
    |||||||||||||||  || |||||||||| |||||||||||| ||| ||||||| ||| ||||||||  |||| | ||||||||||| |||||| ||||    
T  48431808 aattctaaaggatcagttgaaaagctaataactagtttacttggttgtgattcattttgacattcctttaacaattcatgcagaaacctggagttccaat 48431907  T
Q  118 tccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcag 174  Q
    |||||| ||||| ||||| |||||||||||||||| |||||||||||| ||||||||    
T  48431908 tccaattgcaagacaattcattacactcgaagcctgttttaatttcttcaaattcag 48431964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 355 - 479
Target Start/End: Original strand, 48236161 - 48236288
Alignment:
Q  355 aaagcggacgcttttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagct 451  Q
    ||||||| ||||||||||||||| ||||||| |||  |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  48236161 aaagcgggcgcttttcacttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagcc 48236260  T
Q  452 gcaaacgcaacttcttcatcgtacaaac 479  Q
    |||||| ||||||||||||| |||||||    
T  48236261 gcaaacacaacttcttcatcatacaaac 48236288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 41055587 - 41055478
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  41055587 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 41055488  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  41055487 ttcatcgtac 41055478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 55682033 - 55682142
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  55682033 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 55682132  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  55682133 ttcatcgtac 55682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 375059 - 374949
Alignment:
Q  367 tttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 464  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||| ||||||    
T  375059 tttcacttaaaaccgttttaagggtcaattttgtaattttcaaaaccataactattactcttctctatcataaccaaatacacagcctcaaacacaactt 374960  T
Q  465 cttcatcgtac 475  Q
    |||||||||||    
T  374959 cttcatcgtac 374949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 7199255 - 7199364
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||  ||||| |||||||    
T  7199255 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctcctccagaaccaaatacacagccacaaactcaacttc 7199354  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  7199355 ttcatcgtac 7199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 51470181 - 51470076
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  51470181 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 51470082  T
Q  466 ttcatc 471  Q
    ||||||    
T  51470081 ttcatc 51470076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 368 - 479
Target Start/End: Original strand, 49811683 - 49811796
Alignment:
Q  368 ttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacct-aactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 464  Q
    |||||||||||||||||| |||  |  ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||  ||||||    
T  49811683 ttcacttaaaaccgttttaagggtcattttttgtaattttcaaaacgttaactat-actcttctccatcagaaccaaatacacaactgcaaaaacaactt 49811781  T
Q  465 cttcatcgtacaaac 479  Q
    |||||||||||||||    
T  49811782 cttcatcgtacaaac 49811796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 7199063 - 7199186
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 307  Q
    ||||||||||||||||||    | |||| |||||||||||||||| |||||| ||  ||| |  ||||||| ||||||| ||||||||||||||||||||    
T  7199063 tgttgtcaatagcggccgaactcggcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagc 7199162  T
Q  308 ggctgaagcgggcgccattgcggg 331  Q
    || |||||||||||| ||||||||    
T  7199163 ggatgaagcgggcgcaattgcggg 7199186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 37517550 - 37517466
Alignment:
Q  391 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37517550 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 37521766 - 37521682
Alignment:
Q  391 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37521766 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37521682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 20790102 - 20790194
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    |||||||||||||| |||||| ||  ||| |  |||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||    
T  20790102 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 20790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 37517725 - 37517633
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    ||||||||||||||  ||||| ||| ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37517725 cgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 37521941 - 37521849
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    ||||||||||||||  ||||| ||| ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37521941 cgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 51470349 - 51470250
Alignment:
Q  232 gcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    |||| |||||||||||||||| |||||| ||  ||| |  ||| |||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||    
T  51470349 gcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcggg 51470250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 11944923 - 11944973
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 258  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  11944923 tgttgtcaatagcggccgctaccggcgctatcgcggcgcggagcgaccaaa 11944973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 55681905 - 55681963
Alignment:
Q  272 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgg 330  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||    
T  55681905 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgg 55681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 375183 - 375115
Alignment:
Q  254 ccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 322  Q
    |||||| ||| |||||  ||| || |||||||| ||||||||||||| |||||||||||||||||||||    
T  375183 ccaaaaacagcaaaacgcgacgcaacgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgc 375115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 42491054 - 42491101
Alignment:
Q  272 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 319  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||    
T  42491054 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg 42491101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 242 - 385
Target Start/End: Original strand, 21472702 - 21472845
Alignment:
Q  242 ggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagctt 341  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||      
T  21472702 ggcgcggagcggccaaaaccagtaaaacgtgacgcagcgctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcgggtatcaagcgg 21472801  T
Q  342 gctcgat-cgggtcaaagcggacgcttttcacttaaaaccgtttt 385  Q
    || |||| | |||| ||||||||||||||| ||||||||| ||||    
T  21472802 gcgcgatgctggtc-aagcggacgcttttcccttaaaaccatttt 21472845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 368 - 474
Target Start/End: Complemental strand, 33458469 - 33458361
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33458469 ttcatttaaaaccgttttgagggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33458370  T
Q  466 ttcatcgta 474  Q
    |||||||||    
T  33458369 ttcatcgta 33458361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 33458597 - 33458500
Alignment:
Q  272 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 369  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  33458597 gacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 33458500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 34479049 - 34478944
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| || |||||||||||||||| | ||| |||||||||| |  ||||| |||||||    
T  34479049 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattactcttctccaccggaatcaaatacacatccacaaactcaacttc 34478950  T
Q  466 ttcatc 471  Q
    ||||||    
T  34478949 ttcatc 34478944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 17903658 - 17903759
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 307  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||  ||||||     |||||| ||| || |||| ||||| ||||||||||||||||||    
T  17903658 tgttgtcaatagcggccgctaccagcgctatcacggtgcggagcagccaaaaaacacaaaacacgacgcaacgctacaaggtggagcgtttggagaaagc 17903757  T
Q  308 gg 309  Q
    ||    
T  17903758 gg 17903759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 34479169 - 34479118
Alignment:
Q  280 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 331  Q
    ||||||| |||||||||||||||||||||| |||||| | ||| ||||||||    
T  34479169 gctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcggg 34479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 42872710 - 42872601
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    ||||||||||||| |||| |||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  42872710 ttcacttaaaaccattttaagggtcttttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttc 42872611  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  42872610 ttcatcgtac 42872601  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 52004947 - 52004838
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52004947 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52004848  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  52004847 ttcatcgtac 52004838  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 52539329 - 52539438
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52539329 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52539428  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  52539429 ttcatcgtac 52539438  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 42872874 - 42872772
Alignment:
Q  237 atcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataa 336  Q
    |||||||||||||||| |||||| ||| |||||  ||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||    
T  42872874 atcgcggcgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataa 42872775  T
Q  337 agc 339  Q
    |||    
T  42872774 agc 42872772  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 20010833 - 20010724
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||  ||||| |||||||    
T  20010833 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagagccaaatacacagccacaaactcaacttc 20010734  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  20010733 ttcatcgtac 20010724  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 23707293 - 23707176
Alignment:
Q  30 tcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaattccaatagcaag 129  Q
    |||| ||||||||||||| ||||||||||||| || ||||||| |||  |||||||| |||| ||||||||||||| |||||||||||| |||| |||||    
T  23707293 tcaattggaaagctaataactagtttacttgactgtgattcattttgaaattccttaaacaatttatgcagaaacctggagtttcaatttcaattgcaag 23707194  T
Q  130 gcaatttattacactcga 147  Q
      |||| |||||||||||    
T  23707193 agaattcattacactcga 23707176  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 23619277 - 23619353
Alignment:
Q  131 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacat 207  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  23619277 caattcattacactcgaagtctgttttaatttcttcaaattcagcgcgaacttaaccttaacttatgtgttctacat 23619353  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 23650622 - 23650698
Alignment:
Q  131 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacat 207  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  23650622 caattcattacactcgaagtctgttttaatttcttcaaattcagcgcgaacttaaccttaacttatgtgttctacat 23650698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 23736058 - 23736134
Alignment:
Q  131 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctacat 207  Q
    ||||| ||||||||||||| || |||||||||||| | |||||| | ||||||||||||||||||||||||||||||    
T  23736058 caattcattacactcgaagtctgttttaatttcttcacattcagcgcgaacttaaccttaacttatgtgttctacat 23736134  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 369
Target Start/End: Complemental strand, 52005108 - 52004978
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 338  Q
    |||||||||||||| |||||| ||  | | |  ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||| | ||||    
T  52005108 cgcggcgcggagcggccaaaaacaacacagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgggca-aaag 52005010  T
Q  339 cttgctcgat-cgggtcaaagcggacgctttt 369  Q
    |  || |||| ||||||||||||| |||||||    
T  52005009 cgggcgcgatgcgggtcaaagcgggcgctttt 52004978  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 52539190 - 52539273
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 322  Q
    |||||||||||||| |||||| ||  ||| |  ||| ||||||| ||| |||||||||||||||||||||| |||| |||||||    
T  52539190 cgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctgcaacgcggagcgtttggagaaagcggatgaaacgggcgc 52539273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 52789552 - 52789510
Alignment:
Q  276 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgg 318  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  52789552 cagcgctacaaggcggagcgtttggagaaagcgggtgaagcgg 52789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 14620674 - 14620775
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 307  Q
    ||||||||||||||||||||| | ||||||| ||||||||||| | |||||||    ||||    |  ||||||| ||| ||||||||||||||||||||    
T  14620674 tgttgtcaatagcggccgctaccggcgctattgcggcgcggagtggccaaaactgacaaaaagcaatgcagcgctacaaagcggagcgtttggagaaagc 14620773  T
Q  308 gg 309  Q
    ||    
T  14620774 gg 14620775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 36392452 - 36392495
Alignment:
Q  276 cagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 319  Q
    ||||||||||||||||| | |||||||||||||| |||||||||    
T  36392452 cagcgctccaaggcggaacatttggagaaagcgggtgaagcggg 36392495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 20010957 - 20010905
Alignment:
Q  276 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgc 328  Q
    |||||||||||  |||||| |||||||||||||  |||||||||||| |||||    
T  20010957 cagcgctccaacacggagcatttggagaaagcgtatgaagcgggcgcaattgc 20010905  T

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Target: scaffold0368 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 7905 - 7988
Alignment:
Q  393 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7905 tttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttcttcatcgtac 7988  T

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Target: scaffold0368; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 7715 - 7817
Alignment:
Q  237 atcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataa 336  Q
    |||||||||||||||| |||||| ||| |||||  ||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||    
T  7715 atcgcggcgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataa 7814  T
Q  337 agc 339  Q
    |||    
T  7815 agc 7817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 18740 - 18849
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  18740 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 18839  T
Q  466 ttcatcgtac 475  Q
    ||||||||||    
T  18840 ttcatcgtac 18849  T

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Target: scaffold0101; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 18548 - 18671
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 307  Q
    ||||||||||||||||||    | |||| |||||||||||||||| | |||| ||  ||| |  ||| ||||||||||| ||||||| ||||||||||||    
T  18548 tgttgtcaatagcggccgaacgcggcgcgatcgcggcgcggagcggctaaaaacaacaaagcgcgacgcagcgctccaacgcggagcatttggagaaagc 18647  T
Q  308 ggctgaagcgggcgccattgcggg 331  Q
    || |||||||||||| ||||||||    
T  18648 ggatgaagcgggcgcaattgcggg 18671  T

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Target: scaffold0699 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 108 - 23
Alignment:
Q  391 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  108 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 23  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 38566624 - 38566733
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  38566624 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 38566723  T
Q  466 ttcatcgtac 475  Q
    |||| |||||    
T  38566724 ttcaccgtac 38566733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 38566463 - 38566593
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 338  Q
    |||||||||||||| |||||| ||  ||| |  |||||||  |||||| |||||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  38566463 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagttctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaag 38566561  T
Q  339 cttgctcgat-cgggtcaaagcggacgctttt 369  Q
    |  || |||| ||||||||||||| |||||||    
T  38566562 cgggcgcgatgcgggtcaaagcgggcgctttt 38566593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 23728736 - 23728686
Alignment:
Q  208 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 258  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  23728736 tgttgtcaatagcggccgctaccggcgctatcgcggcgcggagcggccaaa 23728686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 37369724 - 37369639
Alignment:
Q  391 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 475  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  37369724 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 37369639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 368 - 471
Target Start/End: Original strand, 41992333 - 41992438
Alignment:
Q  368 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 465  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||  ||||| |||||||    
T  41992333 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactcaacttc 41992432  T
Q  466 ttcatc 471  Q
    ||||||    
T  41992433 ttcatc 41992438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 369
Target Start/End: Complemental strand, 37369909 - 37369779
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 338  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  37369909 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaag 37369811  T
Q  339 cttgctcgat-cgggtcaaagcggacgctttt 369  Q
    |  || |||| ||||||||||||| |||||||    
T  37369810 cgggcgcgatgcgggtcaaagcgggcgctttt 37369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 41992194 - 41992277
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 322  Q
    |||||||||||||| |||||| ||  ||| |  ||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  41992194 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctccaacgcggagtgtttggagaaagcggatgaagcgggcgc 41992277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 8595029 - 8595080
Alignment:
Q  207 ttgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 258  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||| |||||    
T  8595029 ttgttgtcaatagaggccgctaccagcgctatcgcggcgtggagcggccaaa 8595080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 41020544 - 41020474
Alignment:
Q  239 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcgg 309  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| |||| || ||||||||||||||||||||||    
T  41020544 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctctaacgcggagcgtttggagaaagcgg 41020474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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