View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_high_7 (Length: 565)

Name: NF6561_high_7
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_high_7
NF6561_high_7
[»] chr8 (3 HSPs)
chr8 (99-553)||(2951691-2952136)
chr8 (1-106)||(2952539-2952649)
chr8 (502-538)||(34770981-34771017)
[»] chr7 (2 HSPs)
chr7 (441-497)||(37437730-37437786)
chr7 (502-538)||(39542221-39542257)
[»] chr6 (1 HSPs)
chr6 (24-96)||(10375759-10375831)
[»] chr2 (1 HSPs)
chr2 (502-538)||(15120296-15120332)
[»] chr1 (2 HSPs)
chr1 (506-538)||(15579595-15579627)
chr1 (511-539)||(40174752-40174780)


Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 99 - 553
Target Start/End: Complemental strand, 2952136 - 2951691
Alignment:
Q  99 catctaaataacatacatataaatttttgctggtagatagaaactcaattattgcacccaaattactttgtcatcttcagctgaatgaatcaataattgg 198  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  2952136 catctagataacatacatataaatttttgctggtagatagaaactcaattattgcacccaaattactttgtcatcttcagctgaatgaat---------g 2952046  T
Q  199 tgtgtttagaatcaatatattgtgttgatataaaatttgtgaaatgagaacttgattcaaaccaaaaaccagtaaacaattattttggtccctgaatgta 298  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2952045 tgtgtttagaatcaatatattgtgttgatatacaatttgtgaaatgagaacttgattcaaaccaaaaaccagtaaacaattattttggtcgctgaatgta 2951946  T
Q  299 ttgaaattgcaaacaaattctccagtcacttattttgttgcatgagtgacaatcattgcttgaaactgactccgggtaacgacgtccaatctaacaatat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2951945 ttgaaattgcaaacaaattctccagtcacttattttgttgcatgagtgacaatcattgcttgaaactgactccaggtaacgacgtccaatctaacaatat 2951846  T
Q  399 caatatttgtcagttgagccagactttatgaactactccaccgtctctttagttactcgttttggtcttcaaatgtgtattttgttagtcacttaggtct 498  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951845 caatatttatcagttgagccagactttatgaactactccaccgtctctttagttactcgttttggtcttcaaatgtgtattttgttagtcacttaggtct 2951746  T
Q  499 gtttttggtttgacttatttgaatttatctactagcataatatttgtgagatttt 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951745 gtttttggtttgacttatttgaatttatctactagcataatatttgtgagatttt 2951691  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2952649 - 2952539
Alignment:
Q  1 tctcactatttctttggttttcatgtcaatacttatatttctttgtatgtatttaattgttttataagttgtcac-----aaattgattgttcgaataac 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||  |||||||||||||||    
T  2952649 tctcactatttctttggttttcatgtcaatacttatatttctttgtatgtatttaattgttttataagttgtcacgtcacaaaacgattgttcgaataac 2952550  T
Q  96 atacatctaaa 106  Q
    |||||||||||    
T  2952549 atacatctaaa 2952539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 34771017 - 34770981
Alignment:
Q  502 tttggtttgacttatttgaatttatctactagcataa 538  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  34771017 tttggtttgacttatttgagtttatctgctagcataa 34770981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 37437730 - 37437786
Alignment:
Q  441 gtctctttagttactcgttttggtcttcaaatgtgtattttgttagtcacttaggtc 497  Q
    ||||||||||| | || |||| ||| |||||||||| ||||||||||||||| ||||    
T  37437730 gtctctttagtaagtcattttagtcctcaaatgtgtcttttgttagtcactttggtc 37437786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 538
Target Start/End: Original strand, 39542221 - 39542257
Alignment:
Q  502 tttggtttgacttatttgaatttatctactagcataa 538  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  39542221 tttgggttgacttatttgagtttatctactagcataa 39542257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 10375759 - 10375831
Alignment:
Q  24 tgtcaatacttatatttctttgtatgtatttaattgttttataagttgtcacaaattgattgttcgaataaca 96  Q
    ||||||||| ||||||||||||||| | ||| ||||| |||||| || ||||||| | ||||||  |||||||    
T  10375759 tgtcaatacctatatttctttgtatatctttgattgtcttataaattatcacaaaataattgtttaaataaca 10375831  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 15120332 - 15120296
Alignment:
Q  502 tttggtttgacttatttgaatttatctactagcataa 538  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  15120332 tttggattgacttatttgaacttatctactagcataa 15120296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Complemental strand, 15579627 - 15579595
Alignment:
Q  506 gtttgacttatttgaatttatctactagcataa 538  Q
    |||||||||| ||||||||||||||||||||||    
T  15579627 gtttgacttaattgaatttatctactagcataa 15579595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Complemental strand, 40174780 - 40174752
Alignment:
Q  511 acttatttgaatttatctactagcataat 539  Q
    |||||||||||||||||||||||||||||    
T  40174780 acttatttgaatttatctactagcataat 40174752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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