View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_11 (Length: 458)

Name: NF6561_low_11
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_11
NF6561_low_11
[»] chr3 (11 HSPs)
chr3 (136-441)||(31139177-31139480)
chr3 (139-441)||(11271431-11271740)
chr3 (269-433)||(12881529-12881693)
chr3 (231-403)||(8890630-8890795)
chr3 (243-433)||(4847013-4847203)
chr3 (243-433)||(4863995-4864185)
chr3 (246-435)||(4284994-4285184)
chr3 (317-389)||(20487929-20488001)
chr3 (136-273)||(12881084-12881230)
chr3 (323-424)||(3153499-3153600)
chr3 (341-428)||(6461695-6461782)
[»] chr2 (4 HSPs)
chr2 (136-437)||(24185085-24185395)
chr2 (183-408)||(8172670-8172894)
chr2 (186-441)||(16917857-16918110)
chr2 (318-409)||(31603054-31603144)
[»] chr8 (7 HSPs)
chr8 (140-434)||(33168116-33168419)
chr8 (180-409)||(13539582-13539815)
chr8 (180-409)||(13684659-13684892)
chr8 (277-417)||(17337038-17337177)
chr8 (136-409)||(17315135-17315416)
chr8 (347-417)||(12521491-12521561)
chr8 (136-182)||(17337281-17337327)
[»] chr1 (8 HSPs)
chr1 (183-434)||(28553452-28553706)
chr1 (344-430)||(45962908-45962994)
chr1 (136-395)||(12788721-12788990)
chr1 (341-395)||(37627610-37627664)
chr1 (361-400)||(27318871-27318910)
chr1 (246-321)||(37627572-37627647)
chr1 (334-400)||(2130263-2130329)
chr1 (364-400)||(17739176-17739212)
[»] chr4 (12 HSPs)
chr4 (244-425)||(31371500-31371681)
chr4 (249-425)||(10520195-10520371)
chr4 (229-441)||(36614617-36614829)
chr4 (306-417)||(8898710-8898821)
chr4 (246-437)||(53000178-53000362)
chr4 (363-438)||(15154649-15154724)
chr4 (340-429)||(7180414-7180503)
chr4 (306-430)||(12634241-12634363)
chr4 (136-321)||(15154470-15154664)
chr4 (243-400)||(24493170-24493326)
chr4 (334-400)||(55268089-55268155)
chr4 (278-400)||(4743044-4743165)
[»] chr5 (5 HSPs)
chr5 (180-441)||(26266517-26266778)
chr5 (314-434)||(26069460-26069581)
chr5 (180-259)||(12685682-12685761)
chr5 (366-441)||(16766318-16766393)
chr5 (365-400)||(42687394-42687429)
[»] chr7 (7 HSPs)
chr7 (246-437)||(10234796-10234988)
chr7 (341-434)||(1941426-1941519)
chr7 (341-434)||(9046424-9046517)
chr7 (180-317)||(1941486-1941624)
chr7 (334-400)||(1864618-1864684)
chr7 (334-392)||(11242695-11242753)
chr7 (334-395)||(6847544-6847605)
[»] chr6 (1 HSPs)
chr6 (332-426)||(31817595-31817689)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 136 - 441
Target Start/End: Complemental strand, 31139480 - 31139177
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttggaataatttaatgattgaatcatattcaacccaagtataaaatatgttttata 235  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  31139480 atcctttgtctacttttatcatgagtgagtagacttttatagtcttggaataatttaatgattgaatcatatttaacccaagtataaaat--gttttata 31139383  T
Q  236 aaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatat 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  31139382 aaaaatcattttctaatataatttcattgttgttaaatattataacaaatatcaaacgaagaatcgagatgtgaactttgatattgttatttaatcatat 31139283  T
Q  336 ctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgg 435  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31139282 ctcatatatcaaacgaagaaccgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgg 31139183  T
Q  436 gataat 441  Q
    ||||||    
T  31139182 gataat 31139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 139 - 441
Target Start/End: Original strand, 11271431 - 11271740
Alignment:
Q  139 ccttgtctactattatcatgagtgagtagacttttatagtctt---------ggaataatttaatgattgaatcatattcaacccaagtataaaatatgt 229  Q
    ||||||||||||| ||||||||||||||||||||  |||||||         ||| |||| |||||||||| || ||||||||  |||| || ||| | |    
T  11271431 ccttgtctactatgatcatgagtgagtagactttc-tagtcttaggtttgttggactaatataatgattgactcctattcaactgaagtctagaatctat 11271529  T
Q  230 tttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaa 329  Q
    |||||  ||| || ||||||||| |||||||||  || ||||   | ||||||||||||||| |||| | | | |  |||| ||||||||| |||||||     
T  11271530 tttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggatcgaaagatgaagtttgatattattattta- 11271628  T
Q  330 tcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgag 429  Q
    |||||||||| |||||||| |||| |  || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  11271629 tcatatctcaaatatcaaatgaaggatcgaaagatgaagtttgatattggatcaaatgagattagacaagataaacaaaatatgagaataattttgtgag 11271728  T
Q  430 tcttgggataat 441  Q
    ||||||||||||    
T  11271729 tcttgggataat 11271740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 269 - 433
Target Start/End: Original strand, 12881529 - 12881693
Alignment:
Q  269 taaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaag 368  Q
    ||||| ||||||||||||||||   ||||||| ||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  12881529 taaattttataacaaatatcaatcaaagaaccgagaggtgaaattttatattgttatttaatcatatctcaaatatcaaacgaagaaccgagaggtgaag 12881628  T
Q  369 tttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtctt 433  Q
    |||||||||||||||| | || ||||  ||||||||||||| ||||||| | || ||||||||||    
T  12881629 tttgatattggatcaacttagtttaggcaagataaacaaaacatgagaatagttatgtgagtctt 12881693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 231 - 403
Target Start/End: Original strand, 8890630 - 8890795
Alignment:
Q  231 ttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaat 330  Q
    ||||||||| |||||||||||| ||||||||| |||||||||| |||||||||| |       ||||||| ||| ||||| |||||||||||||| || |    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaaca-------aagaaccgagaggtgaagtttgatattgttatatact 8890722  T
Q  331 catatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataa 403  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |||||||| |||||||    
T  8890723 catatctcaaatatcaaacgaagaaccgagaagtgaagtttgatattggaacaaattagattagacaagataa 8890795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 433
Target Start/End: Original strand, 4847013 - 4847203
Alignment:
Q  243 attttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatat 342  Q
    ||||| |||| |||| |||||||| |||||| ||||| ||| ||||||| |||||||| |||  ||   |||||||||||||||||||||| |||| |||    
T  4847013 attttataatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgagagttgttgtttgatattgttatttaatcatgtctcgtat 4847112  T
Q  343 atcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtctt 433  Q
    |||||| |||| |  ||||||| || ||||||||||||  ||||||||||  | | ||||| ||||||||||||| |||||||||| ||||    
T  4847113 atcaaaggaaggatcgagaggtaaaatttgatattggaataaatgagattgtaaacgataagcaaaatatgagaaaaattttgtgactctt 4847203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 433
Target Start/End: Original strand, 4863995 - 4864185
Alignment:
Q  243 attttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatat 342  Q
    ||||| |||| |||| |||||||| | |||| ||||||||| |||||||  ||||||  |||  |||  |||||||||||||||||||||| ||| | ||    
T  4863995 attttataatctaatatcattgttatgaaattttataacaagtatcaaacaaagaactgagagttgatgtttgatattgttatttaatcatgtctaagat 4864094  T
Q  343 atcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtctt 433  Q
    ||||||||||| || |||||||||| ||||||||||||  ||||||||||  |  |||||| |||||||||| || |||||| ||| ||||    
T  4864095 atcaaacgaaggaccgagaggtgaaatttgatattggaataaatgagattgtaagagataagcaaaatatgaaaataattttatgactctt 4864185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 435
Target Start/End: Original strand, 4284994 - 4285184
Alignment:
Q  246 ttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaac--caagatgtgaactttgatattgttatttaatcatatctcatata 343  Q
    ||||||| ||||||||||||| |||||| |||||  |||||| |||||||| ||  | ||| || || ||| |||||  |||| ||| |||| ||| |||    
T  4284994 ttctaatctaatctcattgttattaaattttatataaaatattaaatgaagtacaccgagaggtaaagttttatattaatatt-aattatatttcaaata 4285092  T
Q  344 tcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgg 435  Q
    |||||||||| || |||| || ||||||||||| |||||||||||||||| ||||| ||  ||||| || |||| ||||||  |||||||||    
T  4285093 tcaaacgaagtaccgagatgtaaagtttgatataggatcaaatgagattaaataaggtattcaaaacatcagaataatttttagagtcttgg 4285184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 20488001 - 20487929
Alignment:
Q  317 tattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgag 389  Q
    |||||||||| |||||||| ||| ||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  20488001 tattgttattcaatcatatttcaaatatcaaacaaagtaccgagaggtgaagtttgatattggatcaaatgag 20487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 12881084 - 12881230
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttgg---------aataatttaatgattgaatcatattcaacccaagtataaaata 226  Q
    |||||||||||||||| |||||| |||||||||||||| |  ||||||         |||||||||||||||||||| || ||||||||| | || |||     
T  12881084 atcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgtaggaataatttaatgattgaatcttaatcaacccaaatttagaatc 12881183  T
Q  227 tgttttataaaaaatcattttctaatataatctcattgttgttaaat 273  Q
    | |||||||| ||  |||||||||||||||||||||  |||||||||    
T  12881184 tattttataagaatccattttctaatataatctcatcattgttaaat 12881230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 3153600 - 3153499
Alignment:
Q  323 tatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaatt 422  Q
    ||||||||||||||||| ||||||||||||| |   | ||||||||||||||||  |||||||| || ||||| || |||| ||||| || |||| ||||    
T  3153600 tatttaatcatatctcaaatatcaaacgaagtatcaaaaggtgaagtttgatataagatcaaattaggttagacaacataatcaaaacataagaataatt 3153501  T
Q  423 tt 424  Q
    ||    
T  3153500 tt 3153499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 428
Target Start/End: Original strand, 6461695 - 6461782
Alignment:
Q  341 atatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtga 428  Q
    ||||||| ||||| || || |||||||| |||||||| || ||||||||||| || | ||| ||| ||| ||||||| ||||||||||    
T  6461695 atatcaatcgaagtaccgaaaggtgaagattgatattagaacaaatgagattggacatgatgaaccaaacatgagaataattttgtga 6461782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 437
Target Start/End: Complemental strand, 24185395 - 24185085
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttg---------gaataatttaatgattgaatcatattcaacccaagtataaaata 226  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||||||         ||||||| |||||||| |||  ||| |||||||||| ||  | |    
T  24185395 atccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaacccaagtctaggaca 24185296  T
Q  227 tgttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatt 326  Q
    ||||| |||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||    
T  24185295 tgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagtttgatattgttatt 24185196  T
Q  327 taatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgt 426  Q
    ||||||||||||| ||||||||||||||||  |||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||      
T  24185195 taatcatatctcaaatatcaaacgaagaacaaagaggtcaaatttgatattggatcaaatgagattagacaagataaacaaaacacgagaatagttttcc 24185096  T
Q  427 gagtcttggga 437  Q
    |||||||||||    
T  24185095 gagtcttggga 24185085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 183 - 408
Target Start/End: Complemental strand, 8172894 - 8172670
Alignment:
Q  183 gaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgttgttaaatattataaca 282  Q
    ||||||| |||||||| ||||||| ||||| ||||| |||| | | |||||||  || ||||||||||||||||||||| ||||||||||| || |||||    
T  8172894 gaataatctaatgattaaatcataatcaactcaagtctaaactctattttataggaattcattttctaatataatctcagtgttgttaaat-ttgtaaca 8172796  T
Q  283 aatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatc 382  Q
    ||||||| | ||||| |  | || |||| |||||||||||||||||||||||||| | |||||||||||||||   ||| |||||||||||||||| |||    
T  8172795 aatatcatacgaagatctgatatatgaagtttgatattgttatttaatcatatcttaaatatcaaacgaagaatcaagatgtgaagtttgatattgaatc 8172696  T
Q  383 aaatgagattagataagataaacaaa 408  Q
    |||||| |||||| |||| |||||||    
T  8172695 aaatgaaattagacaagacaaacaaa 8172670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 441
Target Start/End: Original strand, 16917857 - 16918110
Alignment:
Q  186 taatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaat 285  Q
    |||| ||||||||||||||||||||||| |||| || ||| | ||||||  | | || ||||||||| ||||||| |  || ||||   | |||||||||    
T  16917857 taatctaatgattgaatcatattcaacc-aagtctagaatctattttatttacattctttttctaatctaatctcgtcatttttaagattaataacaaat 16917955  T
Q  286 atcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaa 385  Q
    || ||| |||| | | | | ||||| ||| ||||||| ||||| |||||||| | |||||| | |||| |  |||| ||||| |||||||||||||||||    
T  16917956 ataaaacgaaggatcgaaaggtgaagttttatattgtgattta-tcatatcttaaatatcacatgaaggaacgagatgtgaattttgatattggatcaaa 16918054  T
Q  386 tgagattagataagataaacaaaatatgagaacaattttgtgagtcttgggataat 441  Q
    ||| |||||| ||||||||||||| ||||||| | ||||  ||||||| |||||||    
T  16918055 tgatattagaaaagataaacaaaacatgagaatagttttacgagtcttaggataat 16918110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 409
Target Start/End: Complemental strand, 31603144 - 31603054
Alignment:
Q  318 attgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaa 409  Q
    |||||||||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  31603144 attgttatttaatcatatttcaaatatcaaacaaaatactga-aggtgaagtttgatattggatcaaatgagattagacaagataatcaaaa 31603054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 140 - 434
Target Start/End: Complemental strand, 33168419 - 33168116
Alignment:
Q  140 cttgtctactattatcatgagtgagtagacttttatagtct---------tggaataatttaatgattgaatcatattcaacccaagtataaaatatgtt 230  Q
    |||||||||||| ||||| |||||||| |||||| ||||||         ||||||||| |||||||||||||||| |||||| |||| |||||| | ||    
T  33168419 cttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatt 33168320  T
Q  231 ttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaat 330  Q
    |||||| ||  ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||| || ||||||||||||||||    
T  33168319 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaacgaagaaccgagaagtgaagttagatattgttatttaat 33168220  T
Q  331 catatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagt 430  Q
    ||||||||| ||| |||| ||||||| |||| | ||| ||| |||||| |||||||||||||||| ||||||||||||| |||| || | ||||||||||    
T  33168219 catatctcaaatagcaaatgaagaaccgagatgggaaatttaatattgaatcaaatgagattagacaagataaacaaaacatgaaaatatttttgtgagt 33168120  T
Q  431 cttg 434  Q
    ||||    
T  33168119 cttg 33168116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 409
Target Start/End: Complemental strand, 13539815 - 13539582
Alignment:
Q  180 ttggaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgttgttaaatattata 279  Q
    |||||||||| ||||||||||||| |||||||| ||||| || | | | |||||| |||| || ||||||||| || |||||| |||||| ||| |||||    
T  13539815 ttggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttctaatctactctcatcgttgtttaattttata 13539716  T
Q  280 acaaat-----atcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgat 374  Q
    ||||||     ||||||||||  ||| | | ||||| |||||||||||||||| |||| |||||| ||| ||||||||  || || ||||||||||| ||    
T  13539715 acaaattaaatatcaaatgaatgaccgaaa-gtgaagtttgatattgttatttcatcagatctcaaataccaaacgaaagaccgaaaggtgaagtttaat 13539617  T
Q  375 attggatcaaatgagattagataagataaacaaaa 409  Q
    |||| |||||||||||||||| ||||| |||||||    
T  13539616 attgaatcaaatgagattagacaagatgaacaaaa 13539582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 409
Target Start/End: Original strand, 13684659 - 13684892
Alignment:
Q  180 ttggaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgttgttaaatattata 279  Q
    |||||||||| ||||||||||||| |||||||| ||||| || | | | |||||| |||| || ||||||||| || |||||| |||||| ||| |||||    
T  13684659 ttggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttctaatctactctcatcgttgtttaattttata 13684758  T
Q  280 acaaat-----atcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgat 374  Q
    ||||||     ||||||||||  ||| | | ||||| |||||||||||||||| |||| |||||| ||| ||||||||  || || ||||||||||| ||    
T  13684759 acaaattaaatatcaaatgaatgaccgaaa-gtgaagtttgatattgttatttcatcagatctcaaataccaaacgaaagaccgaaaggtgaagtttaat 13684857  T
Q  375 attggatcaaatgagattagataagataaacaaaa 409  Q
    |||| |||||||||||||||| ||||| |||||||    
T  13684858 attgaatcaaatgagattagacaagatgaacaaaa 13684892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 417
Target Start/End: Complemental strand, 17337177 - 17337038
Alignment:
Q  277 ataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatat 376  Q
    ||||||||||||||| |||| ||| | ||||||| ||||||||||||||||| |||||||||  |||||||| |||| |  || | ||||||||||||||    
T  17337177 ataacaaatatcaaacgaaggaccgaaatgtgaagtttgatattgttattta-tcatatctctaatatcaaatgaaggaacgaaaagtgaagtttgatat 17337079  T
Q  377 tggatcaaatgagattagataagataaacaaaatatgagaa 417  Q
    || |||||||||||||||| || || |||||||||||||||    
T  17337078 tgaatcaaatgagattagacaatatcaacaaaatatgagaa 17337038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 409
Target Start/End: Complemental strand, 17315416 - 17315135
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttg--------gaa-taatttaatgattgaatcatattcaacccaagtataaaata 226  Q
    |||||||||||||||| |||||||||||||| ||| || ||||||||        ||| ||||  |||||||||||| || ||||||||| | || |||     
T  17315416 atcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatcctactcaacccaaatttagaatc 17315317  T
Q  227 tgttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatt 326  Q
    | ||||||   || || |||| |||| |||||||||  || ||||   | ||||||||||||||| |||| ||  | | ||||| |||||||||||||||    
T  17315316 tattttattttaattctttttataatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggactgaaaggtgaagtttgatattgttatt 17315217  T
Q  327 taatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaa 409  Q
    || |||||||||| |||||||| |||| |  || | ||||| |||||||||  |||||||||||||||| ||||| |||||||    
T  17315216 ta-tcatatctcaaatatcaaatgaaggaacgaaaagtgaaatttgatattaaatcaaatgagattagacaagatcaacaaaa 17315135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 12521491 - 12521561
Alignment:
Q  347 aacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaa 417  Q
    ||||||| ||||||| |||||||||||| ||  | |||||||| |||||||||| || ||||| |||||||    
T  12521491 aacgaagtactgagatgtgaagtttgatgttcaaacaaatgaggttagataagacaatcaaaacatgagaa 12521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 17337327 - 17337281
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttg 182  Q
    |||||||||||||||| |||||||||||||| ||| || ||||||||    
T  17337327 atcccttgtctactatgatcatgagtgagtaaactattctagtcttg 17337281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 183 - 434
Target Start/End: Original strand, 28553452 - 28553706
Alignment:
Q  183 gaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgttgttaaatat---tata 279  Q
    ||||||| | |||||||||||||||||||||||||| || | | | |||||| |||| |||||||||||| |||||||||||||||| | | |   ||||    
T  28553452 gaataatctgatgattgaatcatattcaacccaagtctagactctattttattaaaattcattttctaatctaatctcattgttgtttagtttatatata 28553551  T
Q  280 acaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattgg 379  Q
    |||||||||||| |||| | | | | ||||| |||||||||||||||| ||||||||||| ||||||||||||| || || ||||||||||||||||||     
T  28553552 acaaatatcaaacgaaggatcgaaaggtgaagtttgatattgttatttcatcatatctcaaatatcaaacgaaggaccgaaaggtgaagtttgatattga 28553651  T
Q  380 atcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttg 434  Q
    |||||||||||||||||||||| ||||||| |||| || | |||||| |||||||    
T  28553652 atcaaatgagattagataagatgaacaaaacatgaaaatagttttgtaagtcttg 28553706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 45962908 - 45962994
Alignment:
Q  344 tcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagt 430  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  45962908 tcaaacgaagaactaggaggtgaagtttaatattagatcaaatgagattagataagataaacaaaacatgagaatagttttgtgagt 45962994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 395
Target Start/End: Original strand, 12788721 - 12788990
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttgg---------aataatttaatgattgaatcatattcaacccaagtataaaata 226  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||         |||||  ||||||| ||| | ||||||||||||||||| | |     
T  12788721 atcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttgaaataagctaatgatggaaccctattcaacccaagtatacactc 12788820  T
Q  227 tgttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaaga-accaagatgtgaactttgatattgttat 325  Q
    | |||||||  ||||  |||||| || || |||||||||  |||||| | ||| | ||||| |||  || | ||  | | ||||| ||| ||||||||||    
T  12788821 tattttatatgaaattgttttcttatctactctcattgtctttaaatttgatatctaatattaaaataaaagactgaaaggtgaagtttaatattgttat 12788920  T
Q  326 ttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattaga 395  Q
      ||||| || ||| ||||||||||||| || |||||||||||||||||||||   ||||||||||||||    
T  12788921 cgaatcaaatttcaaatatcaaacgaaggaccgagaggtgaagtttgatattgatacaaatgagattaga 12788990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 37627610 - 37627664
Alignment:
Q  341 atatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattaga 395  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  37627610 atatcaaacgaagtactgagaggtgaaatttgatattggatcaaatgagattaga 37627664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 27318871 - 27318910
Alignment:
Q  361 aggtgaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  27318871 aggtgaagtttgatattggaacaaatgagattagacaaga 27318910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 37627572 - 37627647
Alignment:
Q  246 ttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattg 321  Q
    ||||||| ||||||||| ||| |||||| ||||| ||||||||||| |||| ||  ||| ||||| ||||||||||    
T  37627572 ttctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtactgagaggtgaaatttgatattg 37627647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 2130263 - 2130329
Alignment:
Q  334 atctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||| ||||||||||||| |  || || ||||||||||||||||| ||||||| |||||| ||||    
T  2130263 atctcaaatatcaaacgaaggatcgaaagatgaagtttgatattggaacaaatgaaattagacaaga 2130329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 17739176 - 17739212
Alignment:
Q  364 tgaagtttgatattggatcaaatgagattagataaga 400  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  17739176 tgaagtttgatattggaacaaatgaaattagataaga 17739212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 425
Target Start/End: Complemental strand, 31371681 - 31371500
Alignment:
Q  244 ttttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatata 343  Q
    ||||||||| |||||||||  || |||||| ||||||||||||| ||| |||||||| ||||||||| | |||||||||||||||||||||||||| |||    
T  31371681 ttttctaatctaatctcatcattattaaattttataacaaatatgaaacgaagaacctagatgtgaaatgtgatattgttatttaatcatatctcaaata 31371582  T
Q  344 tcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttg 425  Q
    |||||| ||| || |||| || || ||||||||||||| ||||||||| ||| ||||||||||||| ||||||| |||||||    
T  31371581 tcaaacaaaggaccgagatgtaaaatttgatattggataaaatgagatcagacaagataaacaaaacatgagaataattttg 31371500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 249 - 425
Target Start/End: Complemental strand, 10520371 - 10520195
Alignment:
Q  249 taatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaa 348  Q
    |||| ||||||||||||| || ||| ||| | ||||||||||| |||| | |||||  |||| |||||||||||||||||||||||||||| ||||||||    
T  10520371 taatctaatctcattgttattgaattttaaatcaaatatcaaacgaagtatcaagagatgaaatttgatattgttatttaatcatatctcaaatatcaaa 10520272  T
Q  349 cgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttg 425  Q
    ||||| ||||| | |||||| |||||||| ||||| | ||| ||||| ||||||| ||||| ||||||| |||||||    
T  10520271 cgaagtactgaaatgtgaagattgatatttgatcatacgagtttagacaagataatcaaaacatgagaataattttg 10520195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 441
Target Start/End: Complemental strand, 36614829 - 36614617
Alignment:
Q  229 ttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttattta 328  Q
    |||||| |||| ||||||| |||| || ||||||  ||||| ||| | | |||||| ||||||  ||| ||| | | ||||| ||| ||||| |||| |     
T  36614829 ttttattaaaattcattttttaatctactctcatcattgtttaatctaagaacaaaaatcaaacaaaggacccaaaggtgaatttttatattattatatt 36614730  T
Q  329 atcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtga 428  Q
    ||||||||||| |||||||| |||| |  || ||||||||||| || || ||| ||||||||||||| ||||||||||||| ||||||| | ||||||||    
T  36614729 atcatatctcaaatatcaaatgaaggatcgaaaggtgaagtttaattttagattaaatgagattagacaagataaacaaaacatgagaatagttttgtga 36614630  T
Q  429 gtcttgggataat 441  Q
     || |||||||||    
T  36614629 atcatgggataat 36614617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 417
Target Start/End: Original strand, 8898710 - 8898821
Alignment:
Q  306 gtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaac 405  Q
    ||||| ||| |||||  |||| ||||| | |||| |||||||||||| ||  |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8898710 gtgaagtttaatattaatattaaatcaaacctcaaatatcaaacgaataagcgagaggtgaagtttgatattggattaaatgagattagacaagataaac 8898809  T
Q  406 aaaatatgagaa 417  Q
    ||||||| ||||    
T  8898810 aaaatattagaa 8898821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 437
Target Start/End: Complemental strand, 53000362 - 53000178
Alignment:
Q  246 ttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatc 345  Q
    ||||||| ||||||||| ||| |||||| ||||| ||||||||||| |||  ||  | | ||||| | ||||||||||||||||||||||| || |||||    
T  53000362 ttctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaattactgaaaggtgaagtatgatattgttatttaatcatatcccaaatatc 53000263  T
Q  346 aaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttggga 437  Q
    || |||       |||| ||||||||||||||| |||||||||| ||||| ||||||| ||||| ||| ||| | ||||| |||| ||||||    
T  53000262 aaccga-------agagatgaagtttgatattgtatcaaatgaggttagacaagataatcaaaacatgtgaatagttttgagagttttggga 53000178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 15154649 - 15154724
Alignment:
Q  363 gtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgggat 438  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||    
T  15154649 gtgaagtttgatattggagcaaatgagattagacaagataaacaaaacatgagaatagttttgtgagtcttaggat 15154724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 7180414 - 7180503
Alignment:
Q  340 tatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgag 429  Q
    ||||||||| ||||||   ||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| | |||||||||    
T  7180414 tatatcaaatgaagaagcaagaggtgaagtttgatattagatcaaatgagattagacaggataatcaaaatatgagaatagttttgtgag 7180503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 12634363 - 12634241
Alignment:
Q  306 gtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaac 405  Q
    ||||| |||||||||||||||| |||||  |||| |||||||| |||  || || | ||||||||||||||| || |||||||||||||| |||||||||    
T  12634363 gtgaagtttgatattgttatttcatcat--ctcaaatatcaaatgaatgaccgaaatgtgaagtttgatattagaacaaatgagattagacaagataaac 12634266  T
Q  406 aaaatatgagaacaattttgtgagt 430  Q
    |||| ||||||  |||||| |||||    
T  12634265 aaaacatgagagtaattttatgagt 12634241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 321
Target Start/End: Original strand, 15154470 - 15154664
Alignment:
Q  136 atcccttgtctactattatcatgagtgagtagacttttatagtcttggaat---------aatttaatgattgaatcatattcaacccaagtataaaata 226  Q
    |||||||||||||||  |||||||||||||| ||| || ||||||||| ||         ||| ||||||||||||| ||||||||| |||| || | |     
T  15154470 atcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacctaagtctagactc 15154569  T
Q  227 tgttttataaaaaatcattttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattg 321  Q
      |||||| |||| |||||||||||| ||||||| |  ||||| ||| | ||||||||||||||||||   ||| | ||||||| ||||||||||    
T  15154570 aattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtttgatattg 15154664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 24493170 - 24493326
Alignment:
Q  243 attttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgata-ttgttatttaatcatatctcata 341  Q
    |||||||||| |||| |||||||| | ||||   ||||||| ||| ||| |||| ||| | | | ||| ||| ||| ||||||||| |||||  |||| |    
T  24493170 attttctaatctaatttcattgttttcaaattcaataacaagtattaaacgaaggaccgaaaggcgaagtttaatagttgttatttcatcat--ctcaaa 24493267  T
Q  342 tatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||||||||| | ||| || ||||||||||||||||| ||||||| |||||| ||||    
T  24493268 tatcaaacgaaggattgaaagatgaagtttgatattggaacaaatgaaattagacaaga 24493326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 55268089 - 55268155
Alignment:
Q  334 atctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||| ||||||||||||| |  || || ||||||||||||||||| ||||||| |||||| ||||    
T  55268089 atctcaaatatcaaacgaaggatcgaaagatgaagtttgatattggaacaaatgaaattagacaaga 55268155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 400
Target Start/End: Original strand, 4743044 - 4743165
Alignment:
Q  278 taacaaatatcaaatgaagaaccaagatgtgaactttgata-ttgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatat 376  Q
    |||||| ||||||| |||| ||| | | ||||| ||| ||| ||||||||| |||||  |||| ||||||||||||| |   | || |||||||||||||    
T  4743044 taacaagtatcaaacgaaggaccgaaaagtgaagtttaatagttgttatttcatcat--ctcaaatatcaaacgaaggatcaaaagatgaagtttgatat 4743141  T
Q  377 tggatcaaatgagattagataaga 400  Q
    |||| ||||||| |||||| ||||    
T  4743142 tggaacaaatgaaattagacaaga 4743165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 180 - 441
Target Start/End: Original strand, 26266517 - 26266778
Alignment:
Q  180 ttggaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatctcattgtt-gttaaatattat 278  Q
    ||||| |||| ||||||||||||| |||| |||||||||||  ||| |  |||||  ||| || |||||||||||||||||||  || |||||   | ||    
T  26266517 ttggactaatctaatgattgaatcctatttaacccaagtatggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaat 26266616  T
Q  279 aacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtgaagtttgatattg 378  Q
    || ||||||||||||||| ||| | | ||||| ||||||||||||||||| |||||||||| |||||||| |||| ||||| | |||| |||||||||||    
T  26266617 aaaaaatatcaaatgaaggaccgaaaagtgaagtttgatattgttattta-tcatatctcaaatatcaaatgaaggactgaaatgtgaggtttgatattg 26266715  T
Q  379 gatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgggataat 441  Q
    ||||||||||||| ||| || |||||||||| || |||| | |||||||||||||| ||||||    
T  26266716 gatcaaatgagataagacaatataaacaaaacataagaatagttttgtgagtcttgagataat 26266778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 26069581 - 26069460
Alignment:
Q  314 tgatattgttatttaatcatatctcatatatcaaacgaagaactgagaggtg-aagtttgatattggatcaaatgagattagataagataaacaaaatat 412  Q
    |||||||||||||| || |||||||| ||||||||||||  |  || ||||| ||||| |||||||||||||||||||||||| ||||| |||||||       
T  26069581 tgatattgttatttcattatatctcaaatatcaaacgaatgatcgaaaggtggaagttcgatattggatcaaatgagattagacaagatgaacaaaactg 26069482  T
Q  413 gagaacaattttgtgagtcttg 434  Q
    ||||| | ||||||||||||||    
T  26069481 gagaatagttttgtgagtcttg 26069460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 12685761 - 12685682
Alignment:
Q  180 ttggaataatttaatgattgaatcatattcaacccaagtataaaatatgttttataaaaaatcattttctaatataatct 259  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||| | ||||||  ||| || ||||||||| ||||||    
T  12685761 ttggactaatctaatgattgaatcatattcaacccaagtctaaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 16766393 - 16766318
Alignment:
Q  366 aagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgggataat 441  Q
    |||||||| ||| || |||||||| ||||| ||||||| ||||||||||||| ||||||| ||||||||| |||||    
T  16766393 aagtttgaaatttgaacaaatgaggttagacaagataatcaaaatatgagaataattttgagagtcttggaataat 16766318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 42687429 - 42687394
Alignment:
Q  365 gaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||||||||||||| |||||||||||||||||||    
T  42687429 gaagtttgatattggaacaaatgagattagataaga 42687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 10234796 - 10234988
Alignment:
Q  246 ttctaatataatctcattgttgttaaatattataacaaatatcaaatgaagaaccaagatgtgaactttgatattgttatttaatcatatctcatatatc 345  Q
    ||||||| |||||  ||||||||||||| | ||| ||||||||||| |||| ||| ||  ||||| |||||||||||||||||||||||| |||  ||||    
T  10234796 ttctaatctaatcgtattgttgttaaatttaatatcaaatatcaaacgaagtaccgagcggtgaagtttgatattgttatttaatcatatttcaagtatc 10234895  T
Q  346 aaacgaagaactgagaggt-gaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttggga 437  Q
    |||||||| || ||||||| ||||||||||||| ||| ||||||||||||| ||| ||| ||||  ||||||| | ||||| | |||||||||    
T  10234896 aaacgaagtaccgagaggtggaagtttgatatttgataaaatgagattagacaaggtaatcaaagcatgagaatagttttgagtgtcttggga 10234988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 434
Target Start/End: Complemental strand, 1941519 - 1941426
Alignment:
Q  341 atatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttg 434  Q
    ||||||||||||| || || |||||||||||||| || || |||||||||||||| |||||||||||||  |||||| | ||||||||||||||    
T  1941519 atatcaaacgaagtaccgaaaggtgaagtttgattttagaacaaatgagattagacaagataaacaaaacgtgagaatagttttgtgagtcttg 1941426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 434
Target Start/End: Original strand, 9046424 - 9046517
Alignment:
Q  341 atatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttg 434  Q
    ||||||||||||| || || | ||||||||||||||| ||  |||||| |||||| |||| |||||||| ||||||| | ||||||||||||||    
T  9046424 atatcaaacgaaggaccgaaaagtgaagtttgatattagaataaatgatattagacaagacaaacaaaacatgagaatagttttgtgagtcttg 9046517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 1941624 - 1941486
Alignment:
Q  180 ttggaataatttaatgattgaatcatattcaacccaagtataaaa-tatgttttataaaaaatcattttctaatataatctcattgttgttaaatattat 278  Q
    |||||||| |||||||| |||||  ||||||| |||||| || || | | ||||||  ||| || |||||||||||||||| |||||| |||| | ||||    
T  1941624 ttggaatagtttaatgactgaattctattcaaaccaagtttagaactttattttatttaaattctttttctaatataatctgattgtttttaagtcttat 1941525  T
Q  279 aacaaatatcaaatgaagaaccaagatgtgaactttgat 317  Q
    | ||||||||||| |||| ||| | | ||||| ||||||    
T  1941524 atcaaatatcaaacgaagtaccgaaaggtgaagtttgat 1941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 1864618 - 1864684
Alignment:
Q  334 atctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataaga 400  Q
    |||||| ||||||||||||| |  || || ||||||||||||||||| ||||||| |||||| ||||    
T  1864618 atctcaaatatcaaacgaaggatcgaaagatgaagtttgatattggaacaaatgaaattagacaaga 1864684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 392
Target Start/End: Original strand, 11242695 - 11242753
Alignment:
Q  334 atctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagatt 392  Q
    |||||| ||||||||||||  || || |||||||||||||||||||| |||| ||||||    
T  11242695 atctcaaatatcaaacgaatgaccgaaaggtgaagtttgatattggaacaaacgagatt 11242753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 6847605 - 6847544
Alignment:
Q  334 atctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattaga 395  Q
    |||||| ||||||||| ||| |||||   | |||||||||||||||| ||||||||||||||    
T  6847605 atctcaaatatcaaacaaagtactgaacagagaagtttgatattggaacaaatgagattaga 6847544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 31817689 - 31817595
Alignment:
Q  332 atatctcatatatcaaacgaagaactgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgt 426  Q
    |||| ||| ||||||||||||| || || ||||||||||||||||| || |||||||||||||| ||||||| ||||| ||||||| | ||||||    
T  31817689 atatatcaaatatcaaacgaaggaccgaaaggtgaagtttgatattagaacaaatgagattagagaagataagcaaaacatgagaatagttttgt 31817595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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