View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_12 (Length: 439)
Name: NF6561_low_12
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 10295325 - 10295013
Alignment:
| Q |
9 |
tgacatgggacttgg-tcttttctcaataatcctcatcgaaattcaggtaacaattaactaatttcaataaaaatttgtgaaactcattacatcacaatt |
107 |
Q |
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| T |
10295325 |
tgacatgggacttgggtcttttctcgataatcctcatcgaaattcaggtaacaattaactaatttcaataaaaatttgtgaaactcattacatcacaatt |
10295226 |
T |
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| Q |
108 |
cttaaattaaagtctttaattagctcaattggctatggtagtacaaaatagcacacgatcaaatcccctccaccagagtccaaaacaatgaaaaagggaa |
207 |
Q |
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| T |
10295225 |
cttaaattaaagtctttaattaactcaattggctatggtagtacaaaataggacacaatcaaatccccttcaccagagtccaaaacaatgaaaaaaggaa |
10295126 |
T |
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| Q |
208 |
ctttcattagttttatagtcacaaccattttctacatgatgtacggttgttttggatacgcagcttttagagactcaagccccataaaccttctaaccgt |
307 |
Q |
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| T |
10295125 |
ctttcattagttttatagtcacaaccattttctacatgatgtacggttgttttggatacgcaacttttggagactcaagccccgtaaaccttctaaccgt |
10295026 |
T |
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| Q |
308 |
ttttggtttctat |
320 |
Q |
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| T |
10295025 |
ttttggtttctat |
10295013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 320
Target Start/End: Complemental strand, 10298801 - 10298641
Alignment:
| Q |
160 |
acacgatcaaatcccctccaccagagtccaaaacaatgaaaaagggaactttcattagttttatagtcacaaccattttctacatgatgtacggttgttt |
259 |
Q |
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| T |
10298801 |
acacaatcaaatcccctccatcagagtccaaaacaatgaaaaaggctaccttaatcagtgttatagtaacaaccattttctacatgatgtgtggttgttt |
10298702 |
T |
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| Q |
260 |
tggatacgcagcttttagagactcaagccccataaaccttctaaccgtttttggtttctat |
320 |
Q |
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| T |
10298701 |
cggatacgcagcttttggagactcaagtcctggaaaccttctaaccggtttcggtttctat |
10298641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 10294949 - 10294848
Alignment:
| Q |
318 |
tattcaatagtcgagaaaactgccgtcagaaaattcaggtggcgattttgttaacaacaacattaaaatttcaattcttggtatcatgtttggcgtcatg |
417 |
Q |
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| T |
10294949 |
tattcaatagtcgagaaaattgcagtcgaaagatttgggtggcgattttgttaacaacaacattaaaatttcaattcttggtatcatgcttggcgtcatg |
10294850 |
T |
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| Q |
418 |
tt |
419 |
Q |
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|| |
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| T |
10294849 |
tt |
10294848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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