View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_low_13 (Length: 432)
Name: NF6561_low_13
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 269354 - 269761
Alignment:
| Q |
11 |
caaaggtgaacctttccaagagtagagttattcgggat--gttaaggagttagattgcatatggtgtaggggaatgtcggaataagataatcaccttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
269354 |
caaaggtgaacctttccaagagtagagttattcgtgatatgttaaggagttagattgcatatggtgtaggggaatgtcggaataagataatcactttaat |
269453 |
T |
|
| Q |
109 |
gttaagctgagagatggatatttgagagaaaattggaaccacataagcaagcaagatataggtactcctaaaggatgttacaccagatggttcacaaatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
269454 |
gttaagctgagagatggatatttgagagataattggaaccaaataagcaagcaagatataggtactcctaaaggatgttacaccagatggttcacaaatc |
269553 |
T |
|
| Q |
209 |
gttaaagatttgagaaatagaattaaaaatgctaaccaaatggaaactagatttctgatttaattcaattaaatgaagattttcttatgcatacatacca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
269554 |
gttaaagatttgagaaatagaattaaaaatgctaaccaaatggaaactagatttctgatttaattcaactaaatgaagattttcttatgcatacatacca |
269653 |
T |
|
| Q |
309 |
tcacattattgaggtttcatattatcccattaagaatttgaactgcattgccatttattgtattcacaccaggtcatcttttgaatttagcttgtactaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
269654 |
tcacattattgaggtttcatattatcccattaagaatttgaactgcattgccatttattgtattcacaccaggtcatcttttgaatttagcttgtactaa |
269753 |
T |
|
| Q |
409 |
taaaacaa |
416 |
Q |
| |
|
|||||||| |
|
|
| T |
269754 |
taaaacaa |
269761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 29274350 - 29274438
Alignment:
| Q |
14 |
aggtgaacctttccaagagtagagttattcgggatgttaaggagttagattgcatatggtgtaggggaatgtcggaataagataatcac |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29274350 |
aggtgaaccttttcaagagtagagttattcgtgatgttaaggagttagattgcatatggtgtaggggaatgtcggaataagatactcac |
29274438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University