View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_14 (Length: 410)

Name: NF6561_low_14
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_14
NF6561_low_14
[»] chr6 (7 HSPs)
chr6 (210-405)||(31537211-31537406)
chr6 (85-211)||(31537043-31537169)
chr6 (312-405)||(31532031-31532124)
chr6 (17-91)||(31536603-31536677)
chr6 (85-191)||(31531726-31531835)
chr6 (220-265)||(31529792-31529836)
chr6 (210-264)||(31531897-31531950)
[»] chr7 (1 HSPs)
chr7 (142-182)||(37007957-37007997)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 210 - 405
Target Start/End: Original strand, 31537211 - 31537406
Alignment:
Q  210 acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttattcnnnnnnngttataacagaagcagatatagtgattgcataatatt 309  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31537211 acaattgcagaaaagcaataaccaaattaattccatattataacaaaagcttattcaaaaaaagttataacagaagcagatatagtgattgcataatatt 31537310  T
Q  310 gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31537311 gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagccattttgaatcttgtattcaaatgttctgtgctcct 31537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 31537043 - 31537169
Alignment:
Q  85 tcctaaggcattttatacattattgcatattttctatcaaaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatact 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31537043 tcctaaggcattttatacattattgcatattttctatcaaaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatact 31537142  T
Q  185 caatgcaagtgcttcttggatcgatac 211  Q
    |||| ||||||||||| ||||||||||    
T  31537143 caatacaagtgcttctgggatcgatac 31537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 31532031 - 31532124
Alignment:
Q  312 aagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct 405  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31532031 aagaagaagaaaaggatcaaagtatgcgtgagatacccattatattctcaaagtaagcaattttgaaccttgtattcaaatgttatgtgctcct 31532124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 31536603 - 31536677
Alignment:
Q  17 attttccataatcataattatctctttttgttatggaacttcggaacattctaattcaatctttttgttcctaag 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31536603 attttccataatcataattatctctttttgttatggaacttcggaacattctaattcaatctttttgttcctaag 31536677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 31531726 - 31531835
Alignment:
Q  85 tcctaaggcattttatacattattgcatat-tttctatcaaaaac-----catcctttcaaaaattattcttttatctaatcaccatagcaaaagagatt 178  Q
    ||||||| |||||| ||||||||||||||| ||||||| |||||      |||||||||||||||||||||| |   |||||||||||||||||||||||    
T  31531726 tcctaagacattttttacattattgcatatatttctattaaaaaaaaaaacatcctttcaaaaattattcttgt---taatcaccatagcaaaagagatt 31531822  T
Q  179 gatactcaatgca 191  Q
    ||||||| |||||    
T  31531823 gatactcgatgca 31531835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 31529792 - 31529836
Alignment:
Q  220 aaaagcaataaccaaattaattccatattataacaaaagcttattc 265  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31529792 aaaagcaataaccaa-ttaattccatattataacagaagcttattc 31529836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 31531897 - 31531950
Alignment:
Q  210 acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttatt 264  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||| | |||||||    
T  31531897 acaagtgcagaaaagcaataacc-aattaattccacattataacagacgcttatt 31531950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 37007957 - 37007997
Alignment:
Q  142 attattcttttatctaatcaccatagcaaaagagattgata 182  Q
    |||||||||||| || |||||| ||||||||||||||||||    
T  37007957 attattcttttagctgatcaccgtagcaaaagagattgata 37007997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University