View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_15 (Length: 400)

Name: NF6561_low_15
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_15
NF6561_low_15
[»] chr6 (4 HSPs)
chr6 (18-128)||(8925922-8926032)
chr6 (18-128)||(8936179-8936289)
chr6 (324-390)||(8925660-8925726)
chr6 (324-390)||(8935917-8935983)
[»] chr4 (2 HSPs)
chr4 (18-128)||(36758795-36758905)
chr4 (332-385)||(36758549-36758600)
[»] chr2 (2 HSPs)
chr2 (18-128)||(16151030-16151140)
chr2 (332-387)||(16150742-16150794)
[»] chr1 (2 HSPs)
chr1 (18-128)||(23301212-23301322)
chr1 (332-387)||(23301516-23301569)
[»] chr5 (2 HSPs)
chr5 (18-128)||(19083632-19083742)
chr5 (332-385)||(19083388-19083439)
[»] chr3 (2 HSPs)
chr3 (18-128)||(40109939-40110049)
chr3 (332-385)||(40109695-40109746)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 8926032 - 8925922
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8926032 actttcttcttcagctttgaaggactttatgcaaggatatgacaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 8925933  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  8925932 ttccttaatca 8925922  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 8936289 - 8936179
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8936289 actttcttcttcagctttgaaggactttatgcaaggatatgacaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 8936190  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  8936189 ttccttaatca 8936179  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 8925726 - 8925660
Alignment:
Q  324 gactgggaacaattattatggcaagtgaaaagaacaacccataactaaattcttacttgtttttcat 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8925726 gactaggaacaattattatggcaagtgaaaagaacaacccataactaaattcttacttgtttttcat 8925660  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 8935983 - 8935917
Alignment:
Q  324 gactgggaacaattattatggcaagtgaaaagaacaacccataactaaattcttacttgtttttcat 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935983 gactaggaacaattattatggcaagtgaaaagaacaacccataactaaattcttacttgtttttcat 8935917  T

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Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 36758905 - 36758795
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36758905 actttcttcttatgctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatatggttgttgtacctgagtgagttaa 36758806  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  36758805 ttccttaatca 36758795  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 36758600 - 36758549
Alignment:
Q  332 acaattattatggcaagtgaaaagaacaacccataactaaattcttacttgttt 385  Q
    ||||||||||||||||||||||  || ||||||||| ||||||||||| |||||    
T  36758600 acaattattatggcaagtgaaa--aagaacccataagtaaattcttacatgttt 36758549  T

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Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 16151140 - 16151030
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16151140 actttcttcttctgctttgaaggactttatgcaaggatatgacaagtgaaaaagaacaacccatttatactcatatggttgttgtacctgagtgagttaa 16151041  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  16151040 ttccttaatca 16151030  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 16150794 - 16150742
Alignment:
Q  332 acaattattatggcaagtgaaaagaacaacccataactaaattcttacttgttttt 387  Q
    ||||||||||||||||||||||  || ||||||| | |||||||||||||||||||    
T  16150794 acaattattatggcaagtgaaa--aagaacccat-agtaaattcttacttgttttt 16150742  T

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Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 23301212 - 23301322
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23301212 actttcttcttatgctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatatggttgttgtacctgagtgagttaa 23301311  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  23301312 ttccttaatca 23301322  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 23301516 - 23301569
Alignment:
Q  332 acaattattatggcaagtgaaaagaacaacccataactaaattcttacttgttttt 387  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  23301516 acaattattatggcaagtgaaaa--agaacccataagtaaattcttacttgttttt 23301569  T

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Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 19083742 - 19083632
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  19083742 actttcttcttatgctttgaaggactttatgcaaggatatagcaagtgaaaaagaacaactcatttatactcatatggttgttgtacctgagtgagttaa 19083643  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  19083642 ttccttaatca 19083632  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 19083439 - 19083388
Alignment:
Q  332 acaattattatggcaagtgaaaagaacaacccataactaaattcttacttgttt 385  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||| |||||    
T  19083439 acaattattatggcaagtgaaaag--gaacccataagtaaattcttacatgttt 19083388  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 40110049 - 40109939
Alignment:
Q  18 actttcttcttcagctttgaaggactttatgcaaggatatggcaagtgaaaaagaacaacccatttatactcatattgttgttgtacctgagtgagttaa 117  Q
    |||| ||||||  |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  40110049 acttacttcttatgctttgaaggacttcatgcaaggatatgacaagtgaaaaagaacaacccatttatactcatatggttgatgtacctgagtgagttaa 40109950  T
Q  118 ttccttaatca 128  Q
    |||||||||||    
T  40109949 ttccttaatca 40109939  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 40109746 - 40109695
Alignment:
Q  332 acaattattatggcaagtgaaaagaacaacccataactaaattcttacttgttt 385  Q
    ||||||||||||||||||||||  || ||||||||| ||||||||||| |||||    
T  40109746 acaattattatggcaagtgaaa--aagaacccataagtaaattcttacatgttt 40109695  T

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