View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_18 (Length: 378)
Name: NF6561_low_18
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 2843990 - 2844337
Alignment:
| Q |
15 |
atcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgacctacgtttcaaactcaaaatcctcttcccc |
114 |
Q |
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| T |
2843990 |
atcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgacctacgtttcaaactcaaaatcctcttcccc |
2844089 |
T |
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| Q |
115 |
ttagcatcatatccactgtccctgtctactaatgaaagcaaacgcggacctgaacaagaactctcgtcttccaattcaacaatcctactatcacttgttt |
214 |
Q |
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| T |
2844090 |
ttagcatcatatccactgtccctgtctactaatgaaagcaaacgcggacctgaacaagaactctcgtcttccaattcaacaatcctactatcacttgttt |
2844189 |
T |
|
| Q |
215 |
tttctttaacatcaacaacaatgttgttctcattggaattatctaaagaatgacctttcttcacccaaaccaaatcaaacggaaacctcttcgccgccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2844190 |
tttctttaacatcaacaacaatgttgttctcattggaattatctaaagaatgacctttcttcacccaaaccaaatcaaacggaaacctcttcgccgccat |
2844289 |
T |
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| Q |
315 |
tacttgaatggaacatatcttccttaaaggcaactcaaacaatatctt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2844290 |
tacttgaatggaacatatcttccttaaaggcaactcaaacaatatctt |
2844337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 2839768 - 2840118
Alignment:
| Q |
15 |
atcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgacctacgtttcaaactcaaaatcctcttcccc |
114 |
Q |
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||||||| |||| |||||||| | ||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||| || ||||| ||| |
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| T |
2839768 |
atcacaaggaatgaccgaatcgttctttccataatcataactacctctcttcctccgccgaattccagacctacgtttcaaactcataactctctttccc |
2839867 |
T |
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| Q |
115 |
ttagcatcatatccactgtccctgtctactaatgaaagcaaacgcggacctgaacaagaactctcgtcttccaattcaacaatcc------tactatcac |
208 |
Q |
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| T |
2839868 |
ttagcatcacatccactttcaatgtctattaaagaaagcaaacgtggaccagaacacgaattctcatcttccaattcaccaatcccattagtattatcac |
2839967 |
T |
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| Q |
209 |
ttgttttttctttaacatcaacaacaatgttgttctcattggaattatctaaagaatgacctttcttcacccaaaccaaatcaaacggaaacctcttcgc |
308 |
Q |
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|||||| || |||| || |||||| || ||||| |||||| ||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
2839968 |
atgttttctcattaaaattaacaaccattttgttgccattggtattgtctaaagaatgacctttcttcacccaaacaagatcaaatggaaacctcttcgc |
2840067 |
T |
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| Q |
309 |
cgccattacttgaatggaacatatcttccttaaaggcaactcaaacaatat |
359 |
Q |
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||||||||||||||||||||||| || |||||||| | ||||||||||| |
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| T |
2840068 |
cgccattacttgaatggaacatacgttttttaaaggccattcaaacaatat |
2840118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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