View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_low_2 (Length: 906)
Name: NF6561_low_2
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 749; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 18 - 906
Target Start/End: Complemental strand, 39527713 - 39526806
Alignment:
| Q |
18 |
taaagagccaaaaagaaagatgtctcggtgtcatagtgataagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527713 |
taaagagccaaaaagaaagatgtctcggtgtcatagtgataagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttct |
39527614 |
T |
|
| Q |
118 |
tggaagatagcacgtgtggagaagaattaaaagcactggctgactaaatggagtatagtccaacatatgggcaagttaagaaaaattataggccaaacta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39527613 |
tggaagatagcacgtgtggagaagaattaaaagcactggctgactaaatggagtatagtccaacataagggcaagttaagaaaaattataggccaaacta |
39527514 |
T |
|
| Q |
218 |
acgagagatttagagataaacaaacctatcttaacacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527513 |
acgagagatttagagataaacaaacctatcttaacacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttat |
39527414 |
T |
|
| Q |
318 |
t---------------------acacttaactgttattatttgagattaattattatgcattctttaagattgatatttgtcttactgttatgataagta |
396 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39527413 |
ttctgttgtgtaaaattgttttacacttaactgttattatttgagattaattattatgcattctttaagattgatgtttgtcttactgttatgataagta |
39527314 |
T |
|
| Q |
397 |
tttatcagagaagcactgaatgattgaaaaagttagctccccagtccctacctctctttgtgttttctattgtacactatgctctgtttgcttgtggaat |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527313 |
tttatcagagaagcactgaatgattgaaaaagttagctccccagtccctacctctct--gtgttttctattgtacactatgctctgtttgcttgtggaat |
39527216 |
T |
|
| Q |
497 |
tagtttgcttagnnnnnnnatatcaaactatgcggcataaatcaaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcattt |
596 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527215 |
tagtttgcttagttttttaatatcaaactatgcggcataaatcaaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcattt |
39527116 |
T |
|
| Q |
597 |
cttaacactaacaagtgggttgaggaggtacgtgcagaacgaggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggt |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527115 |
cttaacactaacaagtgggttgaggaggtacgtgcagaacgaggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggt |
39527016 |
T |
|
| Q |
697 |
gagcagggagtcaaccagtcaggacattgagcattttccttgatagttacatatcaactggtttgctgacttgacataannnnnnnncaaatacttttat |
796 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39527015 |
gagtagggagtcaaccagtcaggacattgagcattttccttgatagttacatatcaactggtttgctgacttgacataattttttttcaaatacttttat |
39526916 |
T |
|
| Q |
797 |
ttgtacattagacacctggtttttattagatgtttccatactatgtttgctataattcttgtttggttttcnnnnnnnttggcaagaaaatatttgttgg |
896 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39526915 |
ttgtacattagacacctggtttttattcgatgtttccatactatgtttgctataattcttgtttggttttcaaaaaaattggcaagaaaatatttgttgg |
39526816 |
T |
|
| Q |
897 |
tttatgttct |
906 |
Q |
| |
|
|||||||||| |
|
|
| T |
39526815 |
tttatgttct |
39526806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 586 - 699
Target Start/End: Complemental strand, 37852992 - 37852879
Alignment:
| Q |
586 |
ggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacgaggcagtgatgttattatcgttttggttggaaacaaaactgatcttgt |
685 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| |||||| || ||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
37852992 |
ggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggtagtgatgttataattgtcttggttggaaacaaaactgatcttgt |
37852893 |
T |
|
| Q |
686 |
tgaaaaaaggtgag |
699 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
37852892 |
cgagaaaaggtgag |
37852879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 696
Target Start/End: Original strand, 4583521 - 4583580
Alignment:
| Q |
637 |
gaggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggt |
696 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
4583521 |
gaggcagtgatgtcattattgttcttgttgggaacaaaactgatctcgttgaaaagaggt |
4583580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University