View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_20 (Length: 327)

Name: NF6561_low_20
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_20
NF6561_low_20
[»] chr3 (1 HSPs)
chr3 (9-308)||(32682951-32683250)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 32682951 - 32683250
Alignment:
Q  9 agcacagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgttcattttcatctaagtacctgcacgtcctagtaatttccat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  32682951 agcacagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgatcattttcatctaagtacctgaacgtcctagtaattttcat 32683050  T
Q  109 ccaagtattattgtcatttatttctgcaaacagaaatttacattcagaagtaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683051 ccaagtattattgtcatttatttctgcaaacagaaatttacattcagaagcaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttg 32683150  T
Q  209 tctttctcacatgactgtaacannnnnnnacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatg 308  Q
    |||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683151 tctttctcacgtgactgtaacatttttttacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatg 32683250  T

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