View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_21 (Length: 323)

Name: NF6561_low_21
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_21
NF6561_low_21
[»] chr1 (5 HSPs)
chr1 (1-308)||(44611206-44611513)
chr1 (9-308)||(44144363-44144663)
chr1 (1-204)||(44786072-44786275)
chr1 (1-111)||(35898695-35898805)
chr1 (1-112)||(11545071-11545182)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-250)||(173376-173621)
scaffold0017 (1-186)||(168427-168612)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-186)||(30180-30365)
[»] chr2 (2 HSPs)
chr2 (1-202)||(29228905-29229106)
chr2 (1-202)||(29342204-29342405)
[»] chr3 (2 HSPs)
chr3 (9-204)||(26727091-26727286)
chr3 (1-204)||(8341492-8341695)
[»] chr5 (1 HSPs)
chr5 (1-231)||(29508344-29508573)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44611513 - 44611206
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44611513 acaacataccatactcatcttgaaggtcttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 44611414  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44611413 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 44611314  T
Q  201 atgggaagtatactctcaagaacacacacaccaaataaatataaagaacaggtagtgcacgaggccaatccgtacagcaccatttgcacaatgtttccaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  44611313 atgggaagtatactctcaagaacacacacaccaaataaatataaagaacaggtagtgcacgaggccaatctgtacaacaccatttgcacgatgtttccaa 44611214  T
Q  301 gttgcttc 308  Q
    ||||||||    
T  44611213 gttgcttc 44611206  T

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Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 44144663 - 44144363
Alignment:
Q  9 ccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagttgaacccaa 108  Q
    ||||| ||||||||||   ||||||| ||  ||||||||||  |||||||||||||||||||||| |||| | |||| ||||||||  ||||||||| |     
T  44144663 ccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactttgtgtctacattctttgttgctgagttgaacctat 44144564  T
Q  109 caatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctctaatgggaag 208  Q
    |||||||| | |||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  44144563 caatggaggataacaccaacaatgcatgtaatgcaataatattatagtttctcatcatcatttcaacaacaaaataaagatgagattctctaatgggaag 44144464  T
Q  209 tatactctcaagaacacacacac-caaataaatataaagaacaggtagtgcacgaggccaatccgtacagcaccatttgcacaatgtttccaagttgctt 307  Q
    |||||||||||||| |  | ||| |||||||||||||||||||||||||||  ||||    |||||||| || ||||||||||| |||||||||||||||    
T  44144463 tatactctcaagaaaaaccgcacacaaataaatataaagaacaggtagtgcttgaggttggtccgtacaacatcatttgcacaacgtttccaagttgctt 44144364  T
Q  308 c 308  Q
    |    
T  44144363 c 44144363  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 44786072 - 44786275
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||| ||||| |||||||||| | ||||||| ||  ||||||||||  ||||||| ||| |||||||||| |||| ||| || | | ||    ||||    
T  44786072 acaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtgcttgtctctcactcactttgcactttgtgtctcccttctcttttattgagtt 44786171  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||| ||||| || | |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||  ||||||||||||||| |||||||     
T  44786172 gaacccagcaatgaaggagaacaccaacaatgcatgtaatgtaataatattatagtttctcatcatcatttcaaagacaaaataaagatgagattctctt 44786271  T
Q  201 atgg 204  Q
    ||||    
T  44786272 atgg 44786275  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35898805 - 35898695
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    |||||||||| ||||| ||||||||| ||||||| ||   |||||| ||| ||||||||||||||||||| || || | |||||||| | ||||  ||||    
T  35898805 acaacataccgtactcgtcttgaaggccttgtttgaaaccgaggagagcatgtctctccctctctttgcagttggtatctccattatctattgctgagtt 35898706  T
Q  101 gaacccaacaa 111  Q
    |||||||||||    
T  35898705 gaacccaacaa 35898695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11545071 - 11545182
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    |||||||  |||||| ||||| ||||| |||||| ||  ||||||||||| |||||||||||||| |||||||| | | |||||| |  ||||   ||||    
T  11545071 acaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcacttcatttctccattctccgttgttgagtt 11545170  T
Q  101 gaacccaacaat 112  Q
    ||||||||||||    
T  11545171 gaacccaacaat 11545182  T

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Target: scaffold0017 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 173621 - 173376
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||| ||||| |||||||||||| ||||||| ||| |||||||||| |||||||| ||||||||||||||| ||| |||||| |||||||  |||||    
T  173621 acaacatgccataatcatcttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttcatgtctccattctttgttgttaagtt 173522  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||||||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||     || || ||||||| ||||||||    
T  173521 gaacccaacaatgaaggacaacaccaacagtgcatgtaatgtaataatattatagtttctcatcattatttca-----aacattaagatgagattctcta 173427  T
Q  201 atgggaagtatactctcaagaacacacacac-caaataaatataaagaaca 250  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  173426 atgggaagtatactctcaagaacacacacacataaataaatataaagaaca 173376  T

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Target: scaffold0017; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 168612 - 168427
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||||||||| |||||||||||| ||||||| ||  ||| ||||| | |||||||||| ||||||||||  |||| |||||| ||||||||  ||||    
T  168612 acaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagtt 168513  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaa 186  Q
    |||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||||| ||||||||  |||||||||    
T  168512 gaacccaacaatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaa 168427  T

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Target: scaffold0061 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 30180 - 30365
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||||||||| |||||||||||| ||||||| ||  ||| ||||| | |||||||||| ||||||||||  |||| |||||| ||||||||  ||||    
T  30180 acaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagtt 30279  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaa 186  Q
    |||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||||| ||||||||  |||||||||    
T  30280 gaacccaacaatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaa 30365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29228905 - 29229106
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    |||||||  ||| |||||||| |||| ||||||| ||| |||| |||||  |||||||||||||||||||||| || | |||||||||||||||   |||    
T  29228905 acaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgtt 29229004  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||||||||| || ||||||| ||||||||||  |||||| |||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||    
T  29229005 gaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattctcta 29229104  T
Q  201 at 202  Q
    ||    
T  29229105 at 29229106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29342204 - 29342405
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    |||||||  ||| |||||||| |||| ||||||| ||| |||| |||||  |||||||||||||||||||||| || | |||||||||||||||   |||    
T  29342204 acaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgtt 29342303  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||||||||| || ||||||| ||||||||||  |||||| |||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||    
T  29342304 gaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattctcta 29342403  T
Q  201 at 202  Q
    ||    
T  29342404 at 29342405  T

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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 26727286 - 26727091
Alignment:
Q  9 ccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagttgaacccaa 108  Q
    |||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||||||||||||||| ||| ||| || ||  |||   ||||||||||||    
T  26727286 ccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttcttgtctccgttcttcattgttgagttgaacccaa 26727187  T
Q  109 caatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctctaatgg 204  Q
    |||||||  ||||||||||||||||||  ||| ||  |||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  26727186 caatggaagacaacaccaacaatgcatagaatataagaataatatagtttctcatcataatttcaacaacaaaataaagatgggtttctctaatgg 26727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8341695 - 8341492
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||| ||||| |||||| ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||| || |  |||||| || ||    ||||    
T  8341695 acaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagtt 8341596  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||| ||||| || ||||||||||||||||||  |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  8341595 gaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctcta 8341496  T
Q  201 atgg 204  Q
    ||||    
T  8341495 atgg 8341492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 29508344 - 29508573
Alignment:
Q  1 acaacataccatactcatcttgaaggtcttgtttaaacatgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagtt 100  Q
    ||||||| |||||||||||||||||| ||| ||| ||  |||||||||||  ||||||| ||||||  |||||| | |   |||| |   ||||  ||||    
T  29508344 acaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcatttcatcattctccattgcagagtt 29508443  T
Q  101 gaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctcta 200  Q
    ||||||||||||| |||| ||||| ||||||||||  ||  ||  |||  ||||||||||||||||||||| | ||||||||||||  |||  ||||| |    
T  29508444 gaacccaacaatgaagaataacacaaacaatgcatggaacataagaatcatatagtttctcatcataatttgaccaacaaaataaaactgagtttctc-a 29508542  T
Q  201 atgggaagtatactctcaagaacacacacac 231  Q
    || | ||||||||||| ||||  ||||||||    
T  29508543 atagaaagtatactctgaagagaacacacac 29508573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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