View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_24 (Length: 305)
Name: NF6561_low_24
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 18246881 - 18247084
Alignment:
| Q |
9 |
agcagagagtgaacttttaaatgctgactgaccccatgacatcttgacatgtatgtataatcttatttcaatgctcttattattataaaataatttttgt |
108 |
Q |
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| T |
18246881 |
agcagagagtgaacttttaaatgctgactgaccccatgacatcttgacatgtatgtataatcttatttcaatgctattataattataaaatattttttgt |
18246980 |
T |
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| Q |
109 |
cttactcatcaaattcagcattttatttttgagtggtgatacattgaccacc-------ataaatgatacatacttctcttttatatataaggtgaaatt |
201 |
Q |
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| T |
18246981 |
cttactcatcaaattcagcattttatttttgagtggtgatacattgaccaccataaatgataaatgatacatacttctcttt--tatataaggtgaaatt |
18247078 |
T |
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| Q |
202 |
attaaa |
207 |
Q |
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|||||| |
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| T |
18247079 |
attaaa |
18247084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 18247505 - 18247593
Alignment:
| Q |
200 |
ttattaaaatgtcctatcaaataaggtgtataatgaaaataaggaaaaaatatgtcaacttaacattattatttattttatgttccgat |
288 |
Q |
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| T |
18247505 |
ttattaaaatgtcctatcaaataaggtgtataatgaaagtaaggaaaaaatatgtcaacataacattattatttattttttgctccgat |
18247593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 43417326 - 43417297
Alignment:
| Q |
134 |
tttttgagtggtgatacattgaccaccata |
163 |
Q |
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| T |
43417326 |
tttttgagtggtgatacattgaccaccata |
43417297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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