View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_29 (Length: 271)
Name: NF6561_low_29
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 9362999 - 9363261
Alignment:
| Q |
7 |
ctcaataggcgtcttacnnnnnnnttgatgcataagacacaatatgaaacatggacaagcttgaagccaaggtgttggtcagtttagaatatttggatga |
106 |
Q |
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| T |
9362999 |
ctcaataggcgtcttacaaaaaaattgatgcataagacacaatatgaaacatggacaagcttgaagccaaggtgttggtaagtttagaatatttggatga |
9363098 |
T |
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| Q |
107 |
taacagttgagaagaaaattggatgatagaaatcaagctatgttctcataggctattattcaac-tggtagggccgacccaacagattaagaggcttaaa |
205 |
Q |
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| T |
9363099 |
taacagttaagaagaaaattggatgatagaaatcaagctatgttctcataggctattatttaacttggtagggccgacccaacagattaagaggcttaaa |
9363198 |
T |
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| Q |
206 |
ataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaat |
268 |
Q |
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| T |
9363199 |
acaaaaattttaatgtggcttttaaaaatattttttttaacagaatatttatataaaatcaat |
9363261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 17857008 - 17856948
Alignment:
| Q |
175 |
agggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaata |
235 |
Q |
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| T |
17857008 |
agggccgacccaacagattaagaggcctaaaacaaaaaatttaatgtggcttgtaaaaata |
17856948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 29423336 - 29423394
Alignment:
| Q |
177 |
ggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaata |
235 |
Q |
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| T |
29423336 |
ggccgatccaatagattaagaggcctaaaacaaaaattttaatgcggcctttaaaaata |
29423394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 4941904 - 4941844
Alignment:
| Q |
175 |
agggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaata |
235 |
Q |
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| T |
4941904 |
agggccgtcccaacagattaagaggcctaaagcaaaaattttaatgtggcttttaaaaata |
4941844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 40778172 - 40778123
Alignment:
| Q |
186 |
aacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaata |
235 |
Q |
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| T |
40778172 |
aacagattaggaggcttaaaacaaattttttaatgtggcctttaaaaata |
40778123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 33108079 - 33108040
Alignment:
| Q |
181 |
gacccaacagattaagaggcttaaaataaaatttttaatg |
220 |
Q |
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| T |
33108079 |
gacccaacatattaagaggcttaaaataaaaattttaatg |
33108040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 3860843 - 3860888
Alignment:
| Q |
175 |
agggccgacccaacagattaagaggcttaaaataaaatttttaatg |
220 |
Q |
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| T |
3860843 |
agggccggtccaacagattaagaggcttaaaacaaaaattttaatg |
3860888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 6133246 - 6133295
Alignment:
| Q |
110 |
cagttgagaagaaaattggatgatagaaatcaagctatg-ttctcatagg |
158 |
Q |
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| T |
6133246 |
cagttaagaagaaaattggatgatagaatccaagctatgattctcatagg |
6133295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 13537099 - 13537071
Alignment:
| Q |
177 |
ggccgacccaacagattaagaggcttaaa |
205 |
Q |
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| T |
13537099 |
ggccgacccaacagattaagaggcttaaa |
13537071 |
T |
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