View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_30 (Length: 268)
Name: NF6561_low_30
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_30 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 33198645 - 33198901
Alignment:
| Q |
12 |
aacctgtggttggaggggagacttcaactacattagtcatatataaagttggtgtatacttcgcatacatcacatggttacgaaatattataggtcaatt |
111 |
Q |
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| T |
33198645 |
aacccgtggttggaggggagactccaactacattagtcatatacaaagttggtgtatacttcgcatacatcacatggttacgaaatattataggtcaatc |
33198744 |
T |
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| Q |
112 |
cctaaaaaatagaaattaacgccaatttcaaagtatttaacgnnnnnnnnnnactctagtttttaatgtgaatctcatcttacattattattatttatat |
211 |
Q |
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| T |
33198745 |
cctaaaaaatagaaattaacgccaatttcaaagtttttaacgttttctttttactctagtttttaatgtgaatctcatcttacattattattatttatct |
33198844 |
T |
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| Q |
212 |
gataacatagttccaacagaaactcaagtttgacgcaaaggaccatatgagacgcca |
268 |
Q |
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| T |
33198845 |
tataacatggtttcaacagaaactcaagtttggcgcaaaggaccatatgagacgcca |
33198901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 40211233 - 40211117
Alignment:
| Q |
164 |
actctagtttttaatgtgaatctcatcttacattattat----------tatttatat--gataacatagttccaacagaaactcaagtttgacgcaaag |
251 |
Q |
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| T |
40211233 |
actctagtttttaacgcgaatctcatcttacattattatcactcttgtttatttatatatgttaacatgatttcaacagaaactaaagtttggcgtaaag |
40211134 |
T |
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| Q |
252 |
gaccatatgagacgcca |
268 |
Q |
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| T |
40211133 |
gaccatatgagacgcca |
40211117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 164315 - 164249
Alignment:
| Q |
202 |
ttatttatatgataacatagttccaacagaaactcaagtttgacgcaaaggaccatatgagacgcca |
268 |
Q |
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| T |
164315 |
ttatttatatgataacatggtttcaacagaaactcaagtttggtgcaaaggaccatatgagaagcca |
164249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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