View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_31 (Length: 257)
Name: NF6561_low_31
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_31 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33198893 - 33199130
Alignment:
| Q |
1 |
gagacgccaatattgtgtaacacttatggtttacatttcaaggcgaaaggaaccctcgctaactatcacccaaagagagcccaacacaatcagtcgtcgg |
100 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
33198893 |
gagacgccaatattgtgtaacgcttgtgttttacatttcaaggcgaaaggaaccctcgctaactatctcccaaagagagcccaacacaatcagtcatcgg |
33198992 |
T |
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| Q |
101 |
acattgacattgaaaaagcatctgaaagtaatgcaaatctttcaaaccaaactccaggtaataaaaattgcaataagttaattgactgttcaccccatat |
200 |
Q |
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| T |
33198993 |
acattgacattgaaaaagcatctgaaagtaatgcaaatctttcaaaccaaacttcagataataaaaattgcaataagttaattgactgttcaccccatat |
33199092 |
T |
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| Q |
201 |
ttcaccaaatgtaaagcacaagttattcattttccctt |
238 |
Q |
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| T |
33199093 |
ttcaccaaatgtaaagcacaagttattcattttccctt |
33199130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40211125 - 40210891
Alignment:
| Q |
1 |
gagacgccaatattgtgtaacacttatggtttacatttcaaggcgaaaggaaccctcgctaactatcacccaaagagagcccaacacaatcagtcgtcgg |
100 |
Q |
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||||||||||| ||||||||| ||| ||| || ||||||||||| ||||||||||| | ||||||| ||| |||| ||| || || ||| ||| | | |
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| T |
40211125 |
gagacgccaatcttgtgtaacgcttgtggattgcatttcaaggccaaaggaacccttgaaaactatctcccgaagatagctcagcaaaatatgtcattag |
40211026 |
T |
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| Q |
101 |
acattgacattgaaaaagcatctgaaagtaatgcaaatctttcaaaccaaactccaggtaataaaaattgcaataagttaattgactgttcaccccatat |
200 |
Q |
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| T |
40211025 |
accttgacattgaaaaagcatctcaaagtgacccaaagctttcaaaccaaactccaggtaataaaaattgcaataagttaattaattgttca--ccatat |
40210928 |
T |
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| Q |
201 |
ttcaccaaatgtaaagcacaagttattcattttccct |
237 |
Q |
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| T |
40210927 |
ttcacaaaatttaaagctcaagttattcaatttccct |
40210891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 16972815 - 16972966
Alignment:
| Q |
32 |
tacatttcaaggcgaaaggaaccctcgctaactatcacccaaagagagcccaacacaatcagtcgtcggacattgacattgaaaaagcatctgaaagtaa |
131 |
Q |
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| T |
16972815 |
tacatttcaaggctaagggaacccttgaaaactatatcccaaagacagcccagcaaaatctgttatcagaccctgacgttgaaaaggcatctgaaagtga |
16972914 |
T |
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| Q |
132 |
tgcaaatctttcaaaccaaactccaggtaataaaaattgcaataagttaatt |
183 |
Q |
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| T |
16972915 |
tcccgagctttcaaacgaagctccaggtaataaaaaacgcaataagttaatt |
16972966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 164257 - 164020
Alignment:
| Q |
1 |
gagacgccaatattgtgtaacacttatggtttacatttcaaggcgaaaggaaccctcgctaactatcaccc-aaagagagcccaacacaatcagtcgtcg |
99 |
Q |
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|||| |||||| ||| |||| |||| ||| || ||||| | ||| ||||||||||| | ||||||| ||| |||||| |||| || |||| ||| || |
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| T |
164257 |
gagaagccaatgttgggtaaaacttgtggattgcattttagggctaaaggaacccttgaaaactatctcccgaaagagtgcccggcaaaatctgtcatca |
164158 |
T |
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| Q |
100 |
gacattgacattgaaaaagcatctgaaagtaatgcaaatctttcaaaccaaactccaggtaataaaaattgcaataagttaattgactgttcaccccata |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||| |
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| T |
164157 |
gaccatgacattgaaaaagcatctgaaagtaatgcaaagctttcaaaccaaactccaggtaataaaaactgcaataagttaattaattgtttacctcata |
164058 |
T |
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| Q |
200 |
tttcaccaaatgtaaagcacaagttattcattttccct |
237 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| |
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| T |
164057 |
tttcgccaaatgtaaagcacaagttattcaatttccct |
164020 |
T |
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