View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_36 (Length: 251)

Name: NF6561_low_36
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_36
NF6561_low_36
[»] chr1 (5 HSPs)
chr1 (8-239)||(44612085-44612316)
chr1 (8-247)||(44144868-44145119)
chr1 (124-237)||(11544675-11544788)
chr1 (169-240)||(44785738-44785809)
chr1 (8-83)||(16817769-16817844)
[»] scaffold0017 (2 HSPs)
scaffold0017 (8-247)||(173881-174120)
scaffold0017 (8-247)||(168872-169123)
[»] chr2 (2 HSPs)
chr2 (13-247)||(29228407-29228653)
chr2 (13-247)||(29341706-29341952)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-247)||(29669-29920)
[»] chr3 (3 HSPs)
chr3 (8-240)||(8341956-8342200)
chr3 (143-250)||(26727542-26727649)
chr3 (135-240)||(8333043-8333148)
[»] chr5 (9 HSPs)
chr5 (143-228)||(29507611-29507696)
chr5 (143-228)||(29507755-29507840)
chr5 (143-228)||(29507827-29507912)
chr5 (143-228)||(29507971-29508056)
chr5 (143-228)||(29508043-29508128)
chr5 (134-228)||(29507530-29507624)
chr5 (143-225)||(29508115-29508197)
chr5 (143-228)||(29507683-29507768)
chr5 (143-228)||(29507899-29507984)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 44612316 - 44612085
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaatttggttgttgattctaatattgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44612316 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaatttggttgttgattctaatattgg 44612217  T
Q  108 aattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaa 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44612216 aattggaactgagtaaaagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaa 44612117  T
Q  208 ttgtgagagattcccaagttgagaaggaatct 239  Q
    ||||||||||||||||||||||||||||||||    
T  44612116 ttgtgagagattcccaagttgagaaggaatct 44612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 44145119 - 44144868
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa------------tttggttgttga 95  Q
    ||||||||||| |||||||||||||   ||||||||||||||||||||| | ||||||||||||| ||||||||||            ||||||||||||    
T  44145119 tgagaagaatccttgagattttgaattccactcaagtcaagaattctcagaaaagagagatttgacagccactcaacatttccttgaatttggttgttga 44145020  T
Q  96 ttctaatattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatc 195  Q
    |||||| ||| |||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||  || | |||    
T  44145019 ttctaagattagaattgtaacagagtataagagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatc 44144920  T
Q  196 aaggtgtcgcaattgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  44144919 aaggtgtcgcaatcgtgagagattcccaagttgagcaggaatcttcccatca 44144868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 11544675 - 11544788
Alignment:
Q  124 aagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattccca 223  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||  || ||||||||||||| ||| ||||||||||| |||    
T  11544675 aagagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgcca 11544774  T
Q  224 agttgagaaggaat 237  Q
    ||||||||||||||    
T  11544775 agttgagaaggaat 11544788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 44785738 - 44785809
Alignment:
Q  169 tccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatctt 240  Q
    |||||||||| ||||||  || |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44785738 tccagtgagtccattgttgctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctt 44785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 16817844 - 16817769
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa 83  Q
    |||||| ||||||||||| ||||||||| ||||||||||| | |||| | ||| ||||||||||||||||||||||    
T  16817844 tgagaaaaatcgttgagactttgaacataactcaagtcaatatttcttaaagaggagagatttgatagccactcaa 16817769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 174120 - 173881
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaatttggttgttgattctaatattgg 107  Q
    |||||||||||||||||| |||||||  | |||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  174120 tgagaagaatcgttgagaatttgaactccgctcaagtcaagaatcctcaaagaagagagatttgttagccacacaatttggttgttgattctaagattgg 174021  T
Q  108 aattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaa 207  Q
    ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  || |||||||||| || |||    
T  174020 aattggaactgagaaaaagagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaa 173921  T
Q  208 ttgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    |||||| ||||| ||||||| | |||||| ||||||||||    
T  173920 ttgtgatagatttccaagttcaaaaggaaccttcccatca 173881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 169123 - 168872
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa------------tttggttgttga 95  Q
    |||||||||||||||||||||||||    |||||||||||   |||||| ||| ||||| ||||||||||||||||            ||||| ||||||    
T  169123 tgagaagaatcgttgagattttgaattgtactcaagtcaatttttctcaaagatgagagctttgatagccactcaacatttccttgactttggctgttga 169024  T
Q  96 ttctaatattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatc 195  Q
    |||||| ||  |||||| ||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||| | || |||||    || |||||    
T  169023 ttctaagatcagaattgtaactgagcacaagagaccgcaacaatgaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatc 168924  T
Q  196 aaggtgtcgcaattgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    ||| |||||||||||||| |||||||||||||||  ||||||||||||||||    
T  168923 aagatgtcgcaattgtgatagattcccaagttgaataggaatcttcccatca 168872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 29228407 - 29228653
Alignment:
Q  13 agaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa------------tttggttgttgattcta 100  Q
    |||||| ||||||||||||||||| |||| ||||||| |||||| ||||||||||||| ||||||||||||            |||| ||||| ||||||    
T  29228407 agaatctttgagattttgaacatcgctcaggtcaagatttctcaaagaagagagattttatagccactcaacattgccatgactttgattgtttattcta 29228506  T
Q  101 atattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggt 200  Q
    | ||| ||||||  |  ||||| |||||||| |||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||  || ||||||||||    
T  29228507 agattagaattgtgatggagtacaagagactccaacgatgaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggt 29228606  T
Q  201 gtcgcaattgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    || |||||||||||||||| |||||||||||||||||||||||||||    
T  29228607 gttgcaattgtgagagatttccaagttgagaaggaatcttcccatca 29228653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 29341706 - 29341952
Alignment:
Q  13 agaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa------------tttggttgttgattcta 100  Q
    |||||| ||||||||||||||||| |||| ||||||| |||||| ||||||||||||| ||||||||||||            |||| ||||| ||||||    
T  29341706 agaatctttgagattttgaacatcgctcaggtcaagatttctcaaagaagagagattttatagccactcaacattgccatgactttgattgtttattcta 29341805  T
Q  101 atattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggt 200  Q
    | ||| ||||||  |  ||||| |||||||| |||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||  || ||||||||||    
T  29341806 agattagaattgtgatggagtacaagagactccaacgatgaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggt 29341905  T
Q  201 gtcgcaattgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    || |||||||||||||||| |||||||||||||||||||||||||||    
T  29341906 gttgcaattgtgagagatttccaagttgagaaggaatcttcccatca 29341952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 29669 - 29920
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactcaa------------tttggttgttga 95  Q
    |||||||||||||||||||||||||    |||||||||||   |||||| ||| ||||| ||||||||||||||||            ||||| ||||||    
T  29669 tgagaagaatcgttgagattttgaattgtactcaagtcaatttttctcaaagatgagagctttgatagccactcaacatttccttgactttggctgttga 29768  T
Q  96 ttctaatattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatc 195  Q
    |||||| ||  |||||| ||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||| | || |||||    || |||||    
T  29769 ttctaagatcagaattgtaactgagcacaagagaccgcaacaatgaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatc 29868  T
Q  196 aaggtgtcgcaattgtgagagattcccaagttgagaaggaatcttcccatca 247  Q
    ||| |||||||||||||| |||||||||||||||  ||||||||||||||||    
T  29869 aagatgtcgcaattgtgatagattcccaagttgaataggaatcttcccatca 29920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 8342200 - 8341956
Alignment:
Q  8 tgagaagaatcgttgagattttgaacatcactcaagtcaagaattctcacagaagagagatttgatagccactca------------atttggttgttga 95  Q
    ||||||||||| |||||||||||||||  |||||||  |||  || ||| |||||||||| ||||||||||||||            ||||||||| | |    
T  8342200 tgagaagaatcattgagattttgaacaaaactcaagctaagtcttttcaaagaagagagacttgatagccactcagagtttcgttgaatttggttggtca 8342101  T
Q  96 ttctaatattggaattggaactgagtataagagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatc 195  Q
    |||||| ||  |||||| |||  || || ||||| ||||| || ||||||||||| |||||||||||||||   |||   || |||||   ||| ||||     
T  8342100 ttctaagatcagaattgtaaccaagcatcagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagatt 8342001  T
Q  196 aaggtgtcgcaattgtgagagattcccaagttgagaaggaatctt 240  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  8342000 aaggtgttgcaattgtgagagattcccaagttgagtaggaatctt 8341956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 26727649 - 26727542
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatcttcc 242  Q
    ||||| || ||||| ||||||||| ||||| ||||||||||||  || |||||||||||| |||| |||||||| || |||||||||||||||||||||     
T  26727649 agattccctagttgaaaagggattcctccaatgagttcattgtggctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttct 26727550  T
Q  243 catcaaaa 250  Q
    ||| ||||    
T  26727549 cattaaaa 26727542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 8333148 - 8333043
Alignment:
Q  135 acaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttgagaagg 234  Q
    |||||||||||||| | |||||||||||||||| ||||   || |||||    || |||| ||||||| ||||||||||||||||||||||||||| |||    
T  8333148 acaatgaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtagg 8333049  T
Q  235 aatctt 240  Q
    ||||||    
T  8333048 aatctt 8333043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| |||||||||| || || |||||||||||| |||||||||||||||| ||||||||    
T  29507611 agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| ||||||||||||  || |||||||| ||| |||||||||||||||| ||||||||    
T  29507755 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507827 - 29507912
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| |||||||||| || |  |||||||||||| |||||||||||||||| ||||||||    
T  29507827 agatttccaagttggaagggaattgctccaatgagttcattttcgccgagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| ||||||||||||  || |||||||| ||| |||||||||||||||| ||||||||    
T  29507971 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29508043 - 29508128
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| |||||||||| || |  |||||||||||| |||||||||||||||| ||||||||    
T  29508043 agatttccaagttggaagggaattgctccaatgagttcattttcgccgagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 29507530 - 29507624
Alignment:
Q  134 aacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    |||||||||||||||   ||||| ||||||||| ||||| | ||||||||||  || |||||||||||| | |||||||||||||| ||||||||    
T  29507530 aacaatgaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaag 225  Q
    ||||||||||||||||| || ||| ||||| ||||||||||  | || |||||||||||| |||||||||||||||| |||||    
T  29508115 agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| ||||||||||    || |||||||||||| |||||||||||||||| ||||||||    
T  29507683 agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29507899 - 29507984
Alignment:
Q  143 agatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttg 228  Q
    ||||||||||||||||| || ||| ||||| ||||||||||  | |  |||||||||||| |||||||||||||||| ||||||||    
T  29507899 agatttccaagttggaagggaattgctccaatgagttcatttccgccgagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

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