View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_low_4 (Length: 827)
Name: NF6561_low_4
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 4 - 661
Target Start/End: Original strand, 41433068 - 41433725
Alignment:
| Q |
4 |
ataatttcaacattcaaaacaacacaggctcaatgtcgatcattattatcatttcataataaagtgagcacaatgttagtgaaaaaaagtttcataaaac |
103 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41433068 |
ataatttcaacattcaaaacaacatagactcaatgtcgaccattattatcatttcataataaagtgagcacaatgttagtgaaaataagtttcataaaac |
41433167 |
T |
|
| Q |
104 |
tatccttnnnnnnnnnnnnngtttcataaaa-ctagaaatataatttttctgctgaaaattttgactatgagtaatgctatatgacacgacaaaatttct |
202 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |
|
|
| T |
41433168 |
tatcattcaaaaaaaaaaa-gtttcataaaaactagaaatataatttttctgctgaaaattttgactatgagtaatgatatatgatacgacaaaatttgt |
41433266 |
T |
|
| Q |
203 |
cgtgcagattgaacgaaagcgctatgagttaagttaaaatcaaaatatcacataaatattgaaatgaaagtgaatatacaacataccatatgctccatgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41433267 |
cgtgcagattgaacgaaagcgctatgagttaagttaaaatcaaaatatcacataaatattgaaatgaaagtgaatatacaacataccatatgttccatgt |
41433366 |
T |
|
| Q |
303 |
atgatccatctttcaaaatgtgtagttatgtagcttgccactagcccaccaccatcacatgatttgccttgttgtcatcatggcaaacttacagcacaca |
402 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433367 |
atgatccatctttcaaaatgtgtagttctgtagcttgccactagcccaccaccatcacatgatttgccttgttgtcatcatggcaaacttacagcacaca |
41433466 |
T |
|
| Q |
403 |
atatgaacaacacaataagagatgaatttcaatttaaaagtggtactagaatttatgttagtacctttggatcaaattgaatttagaaaacactgaaaat |
502 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433467 |
atatgaacaacacaataaaagatgaatttcaatgtaaaagtggtactagaatctatgttagtgcctttggatcaaattgaatttagaaaacactgaaaat |
41433566 |
T |
|
| Q |
503 |
aagtttctgagtaatgttaaatttcagtcgtgtgttttacacgacaaatgttgtcgtgcataatagcattttcctttgactatttatatcgaaaacaata |
602 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433567 |
aagtttctgagtaatgttaaatttcggtcgtgtgttttacacgacaaatgttgtcgtgcataatagcattttcctttgactatttatatcgaaaacaata |
41433666 |
T |
|
| Q |
603 |
atctgaagacatttcattacaaaagagttttagcaaataaataatcgaatatcaatata |
661 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433667 |
atctgaagacatttcattagaaaagagttttagcaaataaataatcgaatatcaatata |
41433725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 175 - 578
Target Start/End: Original strand, 8028617 - 8029022
Alignment:
| Q |
175 |
taatgctatatgacacgacaaaatttctcgtgcagattgaacgaaagcgctatgagttaagttaaaatcaaaatatcacataaatattgaaatgaaagtg |
274 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8028617 |
taatgttatatgacacgacaaaatttgtcgtgcagattgaacgaaggcgctataagttaagttaaaatcaaaatatcacataaatattaaaatgaaagtg |
8028716 |
T |
|
| Q |
275 |
aatatacaacataccatatgctccatgtatgatccatctttcaaaatgtgtagttatgtagcttgccactagcccaccaccatcacatgatttgccttgt |
374 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8028717 |
aatatacaacataccatatggtccatgtataatccatctttcaaaatgtgtagttttgtagcttgccactagcccaccaccatcacatgatttgcattgt |
8028816 |
T |
|
| Q |
375 |
tgtcatcatggcaaactt--acagcacacaatatgaacaacacaataagagatgaatttcaatttaaaagtggtactagaatttatgttagtacctttgg |
472 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
8028817 |
tgtcatcatggcaaacttacacagcacccaatatgaacaacacaataagagatgaatttcaatgtaaaagtgctactagaatctatgttactacctttgg |
8028916 |
T |
|
| Q |
473 |
atcaaattgaatttagaaaacactgaaaataagtttctgagtaatgttaaatttcagtcgtgtgttttacacgacaaatgttgtcgtgcataatagcatt |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8028917 |
atcaaattgaatttagaaaacactgaaaataagtttctgagtagtgttaagtttcactcatgtgttttacacgacaaatgttatcgtgtataatagcatt |
8029016 |
T |
|
| Q |
573 |
ttcctt |
578 |
Q |
| |
|
|||||| |
|
|
| T |
8029017 |
ttcctt |
8029022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 169 - 576
Target Start/End: Original strand, 30689178 - 30689582
Alignment:
| Q |
169 |
tatgagtaatgctatatgacacgacaaaatttctcgtgcagattgaacgaaagcgctatgagttaagttaaaatcaaaatatcacataaatattgaaatg |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || |||| |||||||||| | ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30689178 |
tatgtgtaatgctatatgacacgacaaaatttgtcatgcaaattgaacgaatgtgctataagctaagttaaaatcaaaatatcacataaatattgaaata |
30689277 |
T |
|
| Q |
269 |
aaagtgaatatacaacataccatatgctccatgtatgatccatctttcaaaatgtgtagttatgtagcttgccactagcccaccaccatcacatgatttg |
368 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
30689278 |
aaagtgaatatacaacataccatgtggtctacgtatgatccatcttttaaaatgtgtatttatgtagattgccactagcccaccaccatcatatgatttg |
30689377 |
T |
|
| Q |
369 |
ccttgttgtcatcatggcaaacttacagcacacaatatgaacaacacaataagagatgaatttcaatttaaaagtggtactagaatttatgttagtacct |
468 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||| ||| |||||| | |
|
|
| T |
30689378 |
cctcgttgtcatcatggcaaacttacaacacacaatataaacaacacaataagagattaattttaatgtaaaagtggtactagaatctatattagtaatt |
30689477 |
T |
|
| Q |
469 |
ttggatcaaattgaatttagaaaacactgaaaataagtttctgagtaatgttaaatttcagtcgtgtgttttacacgacaaatgttgtcgtgcataatag |
568 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | |||||||| || | | ||| ||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
30689478 |
ttagatcaaattgaatttagaaaacactgaaaataaatatctgagtagtggtgagttt---tcgtgtgttttacacgacaaatgatgtcgtgcataacag |
30689574 |
T |
|
| Q |
569 |
cattttcc |
576 |
Q |
| |
|
||||||| |
|
|
| T |
30689575 |
tattttcc |
30689582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 16467682 - 16467580
Alignment:
| Q |
4 |
ataatttcaacattcaaaacaacacaggctcaatgtcgatcattattatcatttcataataaagtgagcacaatgttagtgaaaa-aaagtttcataaaa |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
16467682 |
ataatttcaacattcaaaacaacccaggctcaatgtcgaccattattgtcgtttcataataaaatgagcacaatgttagtgaaaatcaggtttcataaaa |
16467583 |
T |
|
| Q |
103 |
cta |
105 |
Q |
| |
|
||| |
|
|
| T |
16467582 |
cta |
16467580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 16467593 - 16467546
Alignment:
| Q |
124 |
gtttcataaaactagaaatataatttttctgctgaaaattttgactat |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16467593 |
gtttcataaaactagaaatataatttttctgcagaaaattttgactat |
16467546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 35381611 - 35381713
Alignment:
| Q |
5 |
taatttcaacattcaaaacaacacaggctcaatgtcgatcattattatcatttcataataaagtgagcacaatgtt-agtga-aaaaaagtttcataaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
35381611 |
taatttcaacattcaaaacaacacaagctcaatgtcgaccattattatcgtttcataataaaatgagcacaatgttaagtgagaataaggtttcataaaa |
35381710 |
T |
|
| Q |
103 |
cta |
105 |
Q |
| |
|
||| |
|
|
| T |
35381711 |
cta |
35381713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 14952279 - 14952324
Alignment:
| Q |
5 |
taatttcaacattcaaaacaacacaggctcaatgtcgatcattatt |
50 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
14952279 |
taatttcaacattcaaaacagcataggctcaatgtctatcattatt |
14952324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 35381700 - 35381747
Alignment:
| Q |
124 |
gtttcataaaactagaaatataatttttctgctgaaaattttgactat |
171 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |||| ||||| |
|
|
| T |
35381700 |
gtttcataaaactaaaaatatgatttttctgctgaaattttttactat |
35381747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 653
Target Start/End: Original strand, 35381792 - 35381822
Alignment:
| Q |
623 |
aaaagagttttagcaaataaataatcgaata |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35381792 |
aaaagagttttagcaaataaataatcgaata |
35381822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 574
Target Start/End: Original strand, 29827924 - 29827968
Alignment:
| Q |
530 |
tcgtgtgttttacacgacaaatgttgtcgtgcataatagcatttt |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29827924 |
tcgtgtgttttacacgacaaatgttgtcgtatataatagcatttt |
29827968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University