View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_42 (Length: 237)
Name: NF6561_low_42
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_42 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52550279 - 52550499
Alignment:
| Q |
1 |
atgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttctttgagtcttctccaagattttaatctgctgcataatcagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52550279 |
atgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttctttgagtcttctccaagattttaatctgctgcataatcagtt |
52550378 |
T |
|
| Q |
101 |
ggtcgatttcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaatttaaaaaattagactaaggtttcagcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52550379 |
ggtcgatttcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaatttaaaaaattagactaaggcttcagcag |
52550478 |
T |
|
| Q |
201 |
aatttgtattatagaaaaatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
52550479 |
aatttgtattatagaaaaatg |
52550499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 50672314 - 50672096
Alignment:
| Q |
1 |
atgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttctttgagtcttctccaagattttaatctgctgcataatcagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
50672314 |
atgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttctttgagtcatctccaagattttaatttgctgcataatcagtc |
50672215 |
T |
|
| Q |
101 |
ggtcgatttcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaatttaaaaaattagactaaggtttcagcag |
200 |
Q |
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| T |
50672214 |
ggtcgatttcctttgcttgagtacagaatagaagagtttagttttgtttcatgttgaaacttgtattaaaatttaaaaatttagactaaggtttcatcag |
50672115 |
T |
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| Q |
201 |
aatttgtattatagaaaaa |
219 |
Q |
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|||||||||||||||||| |
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| T |
50672114 |
gatttgtattatagaaaaa |
50672096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 23591272 - 23591125
Alignment:
| Q |
72 |
caagattttaatctgctgcataatcagttggtcgatttcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaa |
171 |
Q |
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|||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
23591272 |
caagattttaatgtcctgcataatcaatcggtcgatttcctttgcttgagtacagaatagaagagtttagttttgtttcatgctcaaacttgtattaaaa |
23591173 |
T |
|
| Q |
172 |
tttaaaaaattagactaaggtttcagcagaatttgtattatagaaaaa |
219 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
23591172 |
tttaaaaatttagactaaggtttcatcagaatttgtattatagaaaaa |
23591125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 7541013 - 7540803
Alignment:
| Q |
14 |
tgtttccattaagattaatttagattttattagtttacaagtttctttgagtcttctccaagattttaatctgctgcataatcagttggtcgatttcctt |
113 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| ||| |||| ||||||||||||||||||| ||||||||| |
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| T |
7541013 |
tgtttccattaagattgatttagattttattagcttacaagtttctttgagttttatccaaaattataatttgctgcataatcagttggtggatttcctt |
7540914 |
T |
|
| Q |
114 |
tgcttgagtacagaata-gaagagttattttttgtttcatgctcaaa-cttgtattgaaattt---aaaaaattagactaaggtttcagcagaatttgta |
208 |
Q |
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|||||||||||| |||| ||| |||| ||||||||||||||||| || ||||||||||| ||||| ||||| | | ||||| |||| ||| ||| |
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| T |
7540913 |
tgcttgagtacaaaatatgaaagtttatggtttgtttcatgctcaaagtttctattgaaatttagaaaaaatttagagtcatgtttctgcaggattggta |
7540814 |
T |
|
| Q |
209 |
ttatagaaaaa |
219 |
Q |
| |
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||||||||||| |
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| T |
7540813 |
ttatagaaaaa |
7540803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14702269 - 14702155
Alignment:
| Q |
1 |
atgcagacactcttgtttccattaagattaatttagattttatt-----agtttacaagtttcttt-gagtcttctccaagattttaatctgctgcataa |
94 |
Q |
| |
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|||||| ||||| ||||||||||| |||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14702269 |
atgcagtcactcatgtttccattatgattaacttagattttattttattagtttataagtttcttttgagtcttctccaagattttaatctgctgcataa |
14702170 |
T |
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| Q |
95 |
tcagttggtcgattt |
109 |
Q |
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|| |||||| ||||| |
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| T |
14702169 |
tcggttggttgattt |
14702155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 12233803 - 12233742
Alignment:
| Q |
161 |
ttgtattgaaatttaaaaa-attagactaaggtttcagcagaatttgtattatagaaaaatg |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
12233803 |
ttgtattgaaatttaaaaatattagactaaggtttcagcaggattagtattatagaaaaatg |
12233742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 23002 - 22892
Alignment:
| Q |
109 |
tcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaatttaaaaaattagactaaggtttcagcagaatttgta |
208 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||| || ||||||| |
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| T |
23002 |
tcctttgcttgagtacataatagaagagtttagttttgtttcatgctcaaacttgtattaaaatataaaaatttagactaaggtttcattaggatttgta |
22903 |
T |
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| Q |
209 |
ttatagaaaaa |
219 |
Q |
| |
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||||| ||||| |
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| T |
22902 |
ttatataaaaa |
22892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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