View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_low_5 (Length: 737)
Name: NF6561_low_5
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 62 - 701
Target Start/End: Original strand, 52662521 - 52663158
Alignment:
| Q |
62 |
acacaagatgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaacac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
52662521 |
acacaagatgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacattgaatagctaaccaagtaacaaacaaacac |
52662620 |
T |
|
| Q |
162 |
tttggaggggcatgattattacaaatcatcttcctc-aagtatatagaattttatgatcttgagtctaacgtccaatacatcttatcataaatggaaaac |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52662621 |
tttggaggggcatgattattacaaatcatcttcctccaagtatatagaattttatgatcttgagtcgaacgtccaatacatcttatcataaatggaaaac |
52662720 |
T |
|
| Q |
261 |
aaatttctattccttgattatatcttattatggtttcctccattgttagaggcagtcagttttctctcgatcttgaatatgaacatgaatgagaatcatc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52662721 |
aaatttctattccttgattatatcttattatagtttcctccattgttagaggcagtcagttttctctcgatcttgaatatgaacatgaatgagaatcatc |
52662820 |
T |
|
| Q |
361 |
tacaaattttcagcggagctagctatcacacctatcacgattcacaacgacgctctaatgatagcgtaagagtaaaactccataacttcgaactcatcta |
460 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52662821 |
tacaaattttcaacggagctaattatcacacctatcacgattcacaacgacgctctaatgatagcgtaagagtaaaactccataacttcgaactcatcta |
52662920 |
T |
|
| Q |
461 |
taggtaagagaaatatatgattcttattgattaacaaagtgaagatacaagggcatttatacaaccaagtgaaaggtaaatgcaacaacaaaacacataa |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52662921 |
taggtaagagaaatatatgattcttattgattaacaaagtgaagatacaagggcatttatacaaccaagtgaaaggtaaatgcaacaacaaaacacataa |
52663020 |
T |
|
| Q |
561 |
atgaatgtcagcttggcaaaacggaatgtcaactaagcaaaactgaatgaaaagtaaaaggaacgcacacacaaaaatagaaacgaaaatcagtttggtc |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52663021 |
atgaatgtcagcttggcaaaacggaatgtcagctaagcaaaactgaatgaaaagcaaaaggaacgcacacacaaaaatagaaacgaaaatcagtttgatc |
52663120 |
T |
|
| Q |
661 |
gttcaaattttgaatcaaatactacatcaactttctttaat |
701 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
52663121 |
gttcaaattttgaatcaaa---tacatcaactttctttaat |
52663158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 52657477 - 52657611
Alignment:
| Q |
62 |
acacaagatgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaacac |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||| || |
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|
| T |
52657477 |
acacaagatgcaagtttggtcacattgtatttcaactttactcagtttatcacacgttggcaatctacaatgaatagttaaccaagtaacaaacaaatac |
52657576 |
T |
|
| Q |
162 |
tttggaggggcatgattattacaaatcatcttcct |
196 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| |
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|
| T |
52657577 |
tttggaggaacaggattattacgaatcatcttcct |
52657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 43191599 - 43191734
Alignment:
| Q |
62 |
acacaagatgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaacac |
161 |
Q |
| |
|
|||||| |||||| |||||||||||| || || |||||| || |||| || |||||||||||| ||||||| |||||||| ||||||||||| |
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| T |
43191599 |
acacaaaatgcaaacttggtcacattgaatatctactttaagcatcctatcacaagttggcaatctatcatgaataatcaaccaagtaacaaacaaacat |
43191698 |
T |
|
| Q |
162 |
tttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
|| |||||| | |||||||||| ||||| |||||| |
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|
| T |
43191699 |
ttaggagggtctggattattacatatcattttcctc |
43191734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 3423426 - 3423491
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattatta |
182 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||| ||| ||||||||||| |||||||| |
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|
| T |
3423426 |
gttggcaatctaccatgaataatcaaccaagtaacaaacatacattttggaggggctggattatta |
3423491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 29456660 - 29456775
Alignment:
| Q |
82 |
cacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattatt |
181 |
Q |
| |
|
||||||||||| |||||||||| ||| |||| | ||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||| ||| ||||||| |
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|
| T |
29456660 |
cacattgtattgcaactttacttaatctatcataagttggcaatctaccatgtatagctagccaagaaacaaacaaacaatttggaggagcaagattatt |
29456759 |
T |
|
| Q |
182 |
acaaatcatcttcctc |
197 |
Q |
| |
|
||| |||| |||||| |
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|
| T |
29456760 |
acatgtcattttcctc |
29456775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 7478215 - 7478338
Alignment:
| Q |
69 |
atgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggag |
168 |
Q |
| |
|
||||| ||||||| ||| | ||| |||||||| ||||| | || || ||||||||||||| ||||||||||| |||| | ||||||||||| ||||||| |
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|
| T |
7478215 |
atgcacgtttggttacaatagattccaactttattcaatatttcacaagttggcaatctaccatgaatagctagccaaataacaaacaaacattttggag |
7478314 |
T |
|
| Q |
169 |
gggcatgattattacaaatcatct |
192 |
Q |
| |
|
| ||| | |||||||| ||||||| |
|
|
| T |
7478315 |
gagcagggttattacatatcatct |
7478338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 18261515 - 18261595
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||| ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
18261515 |
gttggcaatctagcatgaataatcaaccaagtaacaaacaaacattttggaggggctggattattacatatcattttcctc |
18261595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 33631597 - 33631677
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||| ||| ||||||||||| |||||||||| ||||| |||||| |
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|
| T |
33631597 |
gttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctc |
33631677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 1161368 - 1161301
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattaca |
184 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||| | |||||||| |
|
|
| T |
1161368 |
gttggcaatctaccatgaatagctagccaagtaacaaacaaacattttggaggggcagggttattaca |
1161301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 7280034 - 7279954
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
7280034 |
gttggcaatctagcatgaataattaaccaagtaacaaacaaacattttggaggggctggattattacatatcattttcctc |
7279954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 39045383 - 39045453
Alignment:
| Q |
125 |
tctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcc |
195 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
39045383 |
tctagaatgaataattaaccaagtaacaaacaaacattttggaggggcttgattattacatatcattttcc |
39045453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 27179828 - 27179908
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||||||||| |||||||||||| | ||||| |||||||| |||||| |
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|
| T |
27179828 |
gttggtaatctagcatgaatagctaaccaagaaccaaacaaacattttggaggggcagggttattgcaaatcattttcctc |
27179908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 3938381 - 3938461
Alignment:
| Q |
117 |
gttggcaatctacaatgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||| ||| ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
3938381 |
gttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctc |
3938461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 13405665 - 13405582
Alignment:
| Q |
75 |
gtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacaatgaatagctaaccaagtgacaaacaaa |
158 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || || |||||| ||||| ||| |||||||||||||| ||||||||| |
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|
| T |
13405665 |
gtttggtcacgttgtattctaactttactcaatcgttcacaagttggcgatctaacatgtatagctaaccaagtaacaaacaaa |
13405582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 38670468 - 38670402
Alignment:
| Q |
131 |
atgaatagctaaccaagtgacaaacaaacactttggaggggcatgattattacaaatcatcttcctc |
197 |
Q |
| |
|
||||||||| |||||| | ||||||||||| ||||||||| |||| || || |||||||| |||||| |
|
|
| T |
38670468 |
atgaatagcgaaccaattaacaaacaaacattttggagggacatggttgttgcaaatcattttcctc |
38670402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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