View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_low_7 (Length: 585)
Name: NF6561_low_7
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 48331009 - 48330451
Alignment:
| Q |
18 |
atttcaagcatattcaaaaggaggatcccaacttcttctattctatagatttaaacgaggaacaacgtttaagaaatatattttgggttgattcaaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48331009 |
atttcaagcatattcaaaaggaggatcccaacttcttctattctatagatttaaacgaggaacaacgtttaagaaatatattttgggttgattcaaaaag |
48330910 |
T |
|
| Q |
118 |
cattgatgattatctcagctttaatgatgcagtttcatttgatacttcctacataaaaagcaatgataagttgccttttgctccttttgttggagtgaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330909 |
cattgatgattatctcagctttaatgatgcagtttcatttgatacttcctacataaaaagcaatgataagttgccttttgctccttttgttggagtgaac |
48330810 |
T |
|
| Q |
218 |
catcactcccaacctatattgcttggatgtgcattggttgctgatgagactaagccaacttttgtttggttactgaagacatggcttagagcgatgggag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330809 |
catcactcccaacctatattgcttggatgtgcattggttgctgatgagactaagccaacttttgtttggttactgaagacatggcttagagcgatgggag |
48330710 |
T |
|
| Q |
318 |
ggcaagctcccaaagttatagtcaatgatcaagacaaagccttgaaggaagcaattgaagaagtcttcccaagtgtacgtcattgcttttctctttcgca |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330709 |
ggcaagctcccaaagttatagtcactgatcaagacaaagccttgaaggaagcaattgaagaagtcttcccaagtgtacgtcattgcttttctctttcgca |
48330610 |
T |
|
| Q |
418 |
cataatggaaaagatacctgaaaatctgtcttttgtgatcaaacagtataagaacttcttgccaaagtttaagaattgcatttttaagtcttggacagat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330609 |
cataatggaaaagatacctgaaaatctgtcttttgtgatcaaacagtataagaacttcttgccaaagtttaagaattgcatttttaagtcttggacagat |
48330510 |
T |
|
| Q |
518 |
gaacagtttgacatgagatggtgggaaatagtgactatatttgaactccatgatgatgt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330509 |
gaacagtttgacatgagatggtgggaaatagtgactatatttgaactccatgatgatgt |
48330451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 24343406 - 24343439
Alignment:
| Q |
189 |
tgccttttgctccttttgttggagtgaaccatca |
222 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
24343406 |
tgccttttgctccttttgttggagtaaaccatca |
24343439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 42012256 - 42012190
Alignment:
| Q |
202 |
ttttgttggagtgaaccatcactcccaacctatattgcttggatgtgcattggttgctgatgagact |
268 |
Q |
| |
|
|||||||||||| |||||||| ||||| | ||||||||||||||||||| | |||||||||||| |
|
|
| T |
42012256 |
ttttgttggagttaaccatcatgttcaaccaacattgcttggatgtgcattgatagctgatgagact |
42012190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 24186498 - 24186465
Alignment:
| Q |
189 |
tgccttttgctccttttgttggagtgaaccatca |
222 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
24186498 |
tgccttttgctccttttgttggagtaaaccatca |
24186465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 412094 - 412061
Alignment:
| Q |
189 |
tgccttttgctccttttgttggagtgaaccatca |
222 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
412094 |
tgccttttgctccttttgttggagtaaaccatca |
412061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 413929 - 413962
Alignment:
| Q |
189 |
tgccttttgctccttttgttggagtgaaccatca |
222 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
413929 |
tgccttttgctccttttgttggagtaaaccatca |
413962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University