View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6561_low_9 (Length: 549)

Name: NF6561_low_9
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6561_low_9
NF6561_low_9
[»] chr4 (16 HSPs)
chr4 (89-533)||(7058305-7058749)
chr4 (89-533)||(7049384-7049834)
chr4 (89-502)||(7042261-7042681)
chr4 (140-286)||(7007965-7008111)
chr4 (140-250)||(7006155-7006265)
chr4 (137-416)||(6997214-6997495)
chr4 (124-414)||(7015738-7016030)
chr4 (114-240)||(7022817-7022942)
chr4 (290-410)||(7007122-7007247)
chr4 (141-281)||(7029531-7029671)
chr4 (311-414)||(7029193-7029301)
chr4 (342-427)||(7022428-7022514)
chr4 (342-410)||(7006032-7006100)
chr4 (16-56)||(7058782-7058822)
chr4 (9-56)||(7049867-7049914)
chr4 (19-56)||(7042714-7042751)
[»] chr2 (2 HSPs)
chr2 (355-405)||(5860441-5860491)
chr2 (355-405)||(5867079-5867129)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 89 - 533
Target Start/End: Complemental strand, 7058749 - 7058305
Alignment:
Q  89 aatcattgacaaatgtacatctcatatatttatgccatcttaggcttttgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataa 188  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||     
T  7058749 aatcattgacaaatgaacatatcatatatttatgccatcttaggcttctgatttacaaaggcaaattagatatccacctagtgaacatgggaaaacatag 7058650  T
Q  189 ctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaattacatgaaaattgatgtaaggaaattgcacaatctcatcaaagacacttaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  7058649 ctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaattacatgaaaattgatataaggaaattacacaatttcatcaaagacacttaa 7058550  T
Q  289 ttgttttcaccaaattgattgttttttcttaatagaacaaaatatcacttgttattaataatctcttaccttcacagttgcatatgtcatttggttcgag 388  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7058549 atgttttcaccaaattgagtgttttttcttaatagaacaaaatatcacttgttattaataatctcttaccttcacagttgcatatgtcatttggttcgag 7058450  T
Q  389 taagtccttgtgtatctgcatgaaagaaaattaatgattccgattaggatacatgttaagatcctacacaccttcagaaacttggttatgaagcaatatt 488  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7058449 taagtccttgtgtatctgcatgaaaggaaattactgattccgattaggatatatgttaagatcctacacaccttcagaaacttggttatgaagcaatatt 7058350  T
Q  489 taaaaaattggacaggagatcgaatcagttaaacttcaatgttat 533  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||    
T  7058349 taaaaaattggaccggagatcgaaccggttaaacttcaatgttat 7058305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 89 - 533
Target Start/End: Complemental strand, 7049834 - 7049384
Alignment:
Q  89 aatcattgacaaatgtacatctcatatatttatgccatcttaggcttttgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataa 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||     
T  7049834 aatcattgacaaatgaacatctcatatatttatgccatcttaggcttatgatttacaaaggcaaattagatatccacctagagaacatgggaaaacatag 7049735  T
Q  189 ctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaa-ttaattacatgaaaattgatgtaaggaaattgcacaatctcatcaaagacactta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7049734 ctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaatttaattacatgaaaattgatgtaaggaaattgcacaatctcatcagagacactta 7049635  T
Q  288 attgttttcaccaaattgattgttttttcttaatagaacaaaatatcacttg-----ttattaataatctcttaccttcacagttgcatatgtcatttgg 382  Q
    | ||||||||| ||||| | ||||||| ||||| ||||||||| |  |||||     | ||||||||| |||||||||||||||||||||||||||| ||    
T  7049634 aatgttttcacgaaattaagtgtttttacttaaaagaacaaaagagtacttgtgatttaattaataatttcttaccttcacagttgcatatgtcattcgg 7049535  T
Q  383 ttcgagtaagtccttgtgtatctgcatgaaagaaaattaatgattccgattaggatacatgttaagatcctacacaccttcagaaacttggttatgaagc 482  Q
    |||||||||||||||||||||||||||||||| |||||| |||||   ||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  7049534 ttcgagtaagtccttgtgtatctgcatgaaaggaaattactgattaatattaggatacatgttaagatcctacgcaccttcgaaaacttggttatgaagc 7049435  T
Q  483 aatatttaaaaaattggacaggagatcgaatcagttaaacttcaatgttat 533  Q
    ||||||||||||||||||| | ||||| || | ||||||||||||||||||    
T  7049434 aatatttaaaaaattggaccgaagatcaaaccggttaaacttcaatgttat 7049384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 89 - 502
Target Start/End: Complemental strand, 7042681 - 7042261
Alignment:
Q  89 aatcattgacaaatgtacatctcatatatttatgccatcttaggcttttgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataa 188  Q
    |||||||  |||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||| ||||||||||| |||||||||      
T  7042681 aatcatttgcaaatgaacatctcatatatttattccatcttgagattctgatttacaaaggcaaattagatatccacctagtgaacatgggaaaacattg 7042582  T
Q  189 ctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaattacatgaaaattgatgtaaggaaattgcacaatctcatcaaagacacttaa 288  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||| ||| ||  ||| |||||||||||||||||||||      
T  7042581 ctcaggagtgtactcaggagctgtatgtcccgaaccctgcaaaattaattacacgaaaatcgatctaaagatgttgtacaatctcatcaaagacacttgc 7042482  T
Q  289 ttgttttcaccaaattgattgt-tttttcttaatagaacaaaatatcact-----tgttattaataatctcttaccttcacagttgcatatgtcatttgg 382  Q
     | || |||||||||||| ||| ||||| ||||  |||||||| | ||||     | | |||| |||| ||||||||||||||||||| |||||||  |     
T  7042481 atattctcaccaaattgagtgtgtttttattaaatgaacaaaagagcacttatgatttaattactaatttcttaccttcacagttgcaaatgtcatgcga 7042382  T
Q  383 ttcgagtaagtccttgtgtatctgcatgaaa-gaaaattaatgattccgattaggatacatgttaagatcctacacaccttcagaaacttggttatgaag 481  Q
    || | ||||||||||||||||||| |||||| |||||||| |||||  || ||||||| |||||||||||  |  || ||||||||||||||||||||||    
T  7042381 tttgcgtaagtccttgtgtatctgtatgaaaggaaaattactgattaagactaggatagatgttaagatctgatgcagcttcagaaacttggttatgaag 7042282  T
Q  482 caatatttaaaaaattggaca 502  Q
    ||| | ||||| |||||||||    
T  7042281 caaaagttaaagaattggaca 7042261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 140 - 286
Target Start/End: Complemental strand, 7008111 - 7007965
Alignment:
Q  140 tttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaatta 239  Q
    |||||||| |||||||||||||||| |||  |||||| |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  7008111 tttacaaacgcaaattagatatccacctaaggaacatgggaaaacattgctcaggagtgtactaaggagctatatgtccagaaccctgcaaaattaatta 7008012  T
Q  240 catgaaaattgatgtaaggaaattgcacaatctcatcaaagacactt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7008011 catgaaaattgatgtaaggaaattgcacaatctcatcaaagacactt 7007965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 7006265 - 7006155
Alignment:
Q  140 tttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaatta 239  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7006265 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgcaaaattaatta 7006166  T
Q  240 catgaaaattg 250  Q
    |||||||||||    
T  7006165 catgaaaattg 7006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 137 - 416
Target Start/End: Complemental strand, 6997495 - 6997214
Alignment:
Q  137 tgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaa 236  Q
    |||||||||||||||| ||||||||||| ||||||||||| | |||||||  |||||||||||||||||||||| |||||||||||||||||  ||||||    
T  6997495 tgatttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgc--aattaa 6997398  T
Q  237 ttacatgaaaattgatgtaaggaaattgcacaatctcatcaaagacacttaattgttttcaccaaattgattgttttttcttaatagaacaaaatatcac 336  Q
    |||    |||||   | ||| ||| ||||| |||| | |  |||||||| || |  ||||||||| |||| || || ||||||| |||||||||||||||    
T  6997397 ttaagcaaaaatcattataatgaatttgcataatccctttgaagacactgaaat-atttcaccaatttgagtg-ttattcttaaaagaacaaaatatcac 6997300  T
Q  337 ttgtta-ttaat-----aatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatctgcatgaaagaa 416  Q
    |||||| |||||     ||  |||||||||||| |||||| | |||||| | |||||||| |||||||||||||||||||||||||    
T  6997299 ttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaagaa 6997214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 124 - 414
Target Start/End: Complemental strand, 7016030 - 7015738
Alignment:
Q  124 catcttaggcttttgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtactcaggagctatatgtcctgaac 223  Q
    ||||||| |||| ||||| ||||||| |||||||||||||| |||||||||||   |||||||   ||||||||||||||||||||| ||||||||||||    
T  7016030 catcttatgcttctgatt-acaaaggtaaattagatatccacctagtgaacatgccaaaacattgatcaggagtgtactcaggagctgtatgtcctgaac 7015932  T
Q  224 cctgcaaaattaattacatgaaaa-ttgatgtaaggaaattgcacaatctcatcaaagacacttaattgttttcaccaaattgattgttttttcttaata 322  Q
    |||||||||||||||| || |||| | ||| ||| ||| ||| | |||| | | |||||  ||||| |  |||||| ||||||| || ||  |||||| |    
T  7015931 cctgcaaaattaatta-atcaaaagtcgatataatgaatttggataatccctttaaagatgcttaaat-atttcactaaattgagtg-ttaatcttaaaa 7015835  T
Q  323 gaacaaaatatcact-----tgttattaataatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatctgcatgaaag 414  Q
    |||||||| | ||||     | | |||| |||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||    
T  7015834 gaacaaaaaagcactaatgatttaattagtaatttcttaccttcacagttacaaatgtcatttgattcgagtaagtccttgtgtatctgcaagaaag 7015738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 7022942 - 7022817
Alignment:
Q  114 atatttatgccatcttaggcttttgatttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtactcaggagctata 213  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||| | |||||||   |||||||  | | |||||||| ||    
T  7022942 atatttatgccatatcag-cttttgatttacaaaggcaaattagatatccacctagtgaacatggcaaaacattgttcaggagcatccgcaggagctgta 7022844  T
Q  214 tgtcctgaaccctgcaaaattaattac 240  Q
    |||||||||||||||||||||||||||    
T  7022843 tgtcctgaaccctgcaaaattaattac 7022817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 290 - 410
Target Start/End: Complemental strand, 7007247 - 7007122
Alignment:
Q  290 tgttttcaccaaattgattgttttttcttaatagaacaaaatatcacttg-----ttattaataatctcttaccttcacagttgcatatgtcatttggtt 384  Q
    ||||||||||||||||| ||||||||||||| ||||||||| | ||||||     | ||||||||| ||||||||||||||||||| ||||||| || ||    
T  7007247 tgttttcaccaaattgactgttttttcttaaaagaacaaaagagcacttgtgatttaattaataatttcttaccttcacagttgcaaatgtcatgtgatt 7007148  T
Q  385 cgagtaagtccttgtgtatctgcatg 410  Q
    ||||| |||||||||| |||||||||    
T  7007147 cgagtgagtccttgtgcatctgcatg 7007122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 7029671 - 7029531
Alignment:
Q  141 ttacaaaggcaaattagatatccatctagtgaacataggaaaacataactcaggagtgtact-caggagctatatgtcctgaaccctgcaaaattaatta 239  Q
    ||||||||||||||||||| |||| || |||||||| |  ||||||  |||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  7029671 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta 7029573  T
Q  240 catgaaaattgatgtaaggaaattgcacaatctcatcaaaga 281  Q
    |   ||||||||| |||  || | ||||| || |||||||||    
T  7029572 cccaaaaattgatataacaaattagcacagtcacatcaaaga 7029531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 7029301 - 7029193
Alignment:
Q  311 tttttcttaatagaacaaaatatcacttgttattaa-----taatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatct 405  Q
    |||||||||| | ||||||| ||||||||||||| |     |||| || |||||||||||||||| |||||||| | || ||||||||||||||||||||    
T  7029301 tttttcttaaaataacaaaagatcacttgttatttaattagtaatttcctaccttcacagttgcaaatgtcattcgatttgagtaagtccttgtgtatct 7029202  T
Q  406 gcatgaaag 414  Q
    |||||||||    
T  7029201 gcatgaaag 7029193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 7022514 - 7022428
Alignment:
Q  342 attaataatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatctgcatgaaa-gaaaattaatgatt 427  Q
    |||| |||| ||||||||||||||||||| |||||||| | || ||| |||||||||||||||| ||||||| |||||||| |||||    
T  7022514 attagtaatttcttaccttcacagttgcaaatgtcattcgatttgagcaagtccttgtgtatctacatgaaaggaaaattattgatt 7022428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 7006100 - 7006032
Alignment:
Q  342 attaataatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatctgcatg 410  Q
    ||||||||| | ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||    
T  7006100 attaataatttattaccttcacagttgcaaatgtcatgcgattggagtaagtccttgtgtatctgcatg 7006032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 7058822 - 7058782
Alignment:
Q  16 atagaatcaggaaacaactgaaacatgaaaccttgacatta 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7058822 atagaatcaggaaacaactgaaacatgaaaccttgacatta 7058782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 7049914 - 7049867
Alignment:
Q  9 gaagaatatagaatcaggaaacaactgaaacatgaaaccttgacatta 56  Q
    |||||| || |||||||||||||||| |||||||||||||||||||||    
T  7049914 gaagaagatggaatcaggaaacaacttaaacatgaaaccttgacatta 7049867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 7042751 - 7042714
Alignment:
Q  19 gaatcaggaaacaactgaaacatgaaaccttgacatta 56  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  7042751 gaatcagaaaacaactgaaacatgcaaccttgacatta 7042714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 5860491 - 5860441
Alignment:
Q  355 taccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatct 405  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||||||    
T  5860491 taccttcacagttgcaaatgtcatctgattggagtaagtccttgtgtatct 5860441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 5867129 - 5867079
Alignment:
Q  355 taccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatct 405  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||||||    
T  5867129 taccttcacagttgcaaatgtcatctgattggagtaagtccttgtgtatct 5867079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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