View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6562_high_3 (Length: 294)
Name: NF6562_high_3
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6562_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 10679186 - 10679453
Alignment:
| Q |
17 |
agaagcaagttttgaacaagtattagaccccataatacaactcttaatagtactccaatattgatgatccttaatccttttcttcaaccaaggtgaataa |
116 |
Q |
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| T |
10679186 |
agaagcaagttttgaacaagtattagaccccataatacaactcttaatagtactccaatattgatgatccttaatccttttcttcaaccaaggtgaataa |
10679285 |
T |
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| Q |
117 |
ttttgaagatgatactccatataagttctaccaggcacttcaacacccccaccttgagtagtcacaacaaatccaaatatagtcaaaccaataattgttc |
216 |
Q |
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| T |
10679286 |
ttttgaagatgatactccatataagttctaccaggcacttcaacacccccaccttgagtagtcacaacaaatccaaatatagtcaaaccaataattgttc |
10679385 |
T |
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| Q |
217 |
ctataagtaacaacataaccaccaaataaacccaaagtgcccatgccacatgaaaacatgctcctatg |
284 |
Q |
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| T |
10679386 |
ctataagtaacaacataaccaccaaataaacccaaagtgcccatgccacatgaaaacatgctcctatg |
10679453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 274
Target Start/End: Original strand, 42969552 - 42969794
Alignment:
| Q |
32 |
acaagtattagaccccataatacaactcttaatagtactccaatattgatgatccttaatccttttcttcaaccaaggtgaataattttgaagatgatac |
131 |
Q |
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| T |
42969552 |
acaagttttagaccctaaaatacaattctttatagtattccaataacgaggatcttgtattcttttcttcaaccaaggtgaataatctgtaagatgatac |
42969651 |
T |
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| Q |
132 |
tccatataagttctaccaggcacttcaacacccccaccttgagtagtcacaacaaatccaaatatagtcaaaccaataattgttcctataagtaacaaca |
231 |
Q |
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| T |
42969652 |
tcactataagatctaccaggcacttctacaccaccacctttactagtcacaccaaaaccaaatatagtcaaacctaatagtgctactattagcaataaca |
42969751 |
T |
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| Q |
232 |
taaccaccaaataaacccaaagtgcccatgccacatgaaaaca |
274 |
Q |
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| T |
42969752 |
taatcaccaagtacaaccatagtgcacatgcaacatgaaaaca |
42969794 |
T |
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