View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6562_low_10 (Length: 246)

Name: NF6562_low_10
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6562_low_10
NF6562_low_10
[»] chr2 (5 HSPs)
chr2 (1-237)||(16549785-16550021)
chr2 (143-237)||(1979988-1980082)
chr2 (141-237)||(4789218-4789314)
chr2 (141-235)||(16107347-16107441)
chr2 (141-237)||(10733859-10733956)
[»] chr1 (3 HSPs)
chr1 (141-235)||(2981105-2981199)
chr1 (141-237)||(18547880-18547976)
chr1 (140-215)||(12252543-12252618)
[»] chr5 (1 HSPs)
chr5 (141-237)||(14460134-14460230)
[»] chr8 (2 HSPs)
chr8 (141-237)||(26588111-26588207)
chr8 (140-219)||(1165472-1165550)
[»] chr3 (3 HSPs)
chr3 (156-237)||(8354147-8354228)
chr3 (140-241)||(5701026-5701127)
chr3 (156-233)||(22349251-22349328)
[»] chr6 (3 HSPs)
chr6 (140-237)||(7732648-7732745)
chr6 (187-235)||(24585721-24585769)
chr6 (158-237)||(32934080-32934158)
[»] chr7 (1 HSPs)
chr7 (153-215)||(6015811-6015873)
[»] chr4 (1 HSPs)
chr4 (156-196)||(38159313-38159353)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16549785 - 16550021
Alignment:
Q  1 ttgaagtgtctcacaaatttgataaagcagtagtgtcgtagcactttaattcctgttataaacaaatgttgaatgaagtttgttacaatttgttatttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16549785 ttgaagtgtctcacaaatttgataaagcagtagtgtcgtagcactttaattcctgttagaaacaaatgttgaatgaagtttgttacagtttgttatttat 16549884  T
Q  101 tttctcagttatagatatgttgtagttctgcactcagcgccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctat 200  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| |||    
T  16549885 tttctcagttatagatatgttgtagttctgcactcagtgtcagggacggattcaaaaatttcagaaagtcgggtcaaactcgcttatcataaatatttat 16549984  T
Q  201 acaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    |||||||||||||||||||| ||||||||||||||||    
T  16549985 acaaaaatatataaaaccacatccattaaaatgatga 16550021  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 1980082 - 1979988
Alignment:
Q  143 gggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||| ||| |||||||||||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  1980082 gggacggatccagaaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 4789218 - 4789314
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||||| ||| || |||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  4789218 cagggacggatccaaaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 16107347 - 16107441
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 235  Q
    ||||||| ||| ||| |||||||||||||  ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  16107347 cagggacggatccaggaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 10733956 - 10733859
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataa-atatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||||| ||| ||||||||| |||||||| ||||||  ||| ||||||| | |||| || |||||||||||||||||||   |||||||||||||||    
T  10733956 cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcattatatatttaaacaaaaatatataaaaccataaccattaaaatgatga 10733859  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 2981199 - 2981105
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 235  Q
    ||||||| ||| |||||||||||||||||| ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  2981199 cagggacggatccagaaatttcagaaagtggggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 18547880 - 18547976
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||||| ||| ||||||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  18547880 cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 12252618 - 12252543
Alignment:
Q  140 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 215  Q
    ||||| || ||| |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  12252618 ccaggaacggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 12252543  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 14460134 - 14460230
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||||| ||| ||| |||||||||||||| |||||  |||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  14460134 cagggacggatccaggaatttcagaaagtggggtcacgctcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 26588111 - 26588207
Alignment:
Q  141 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    ||||||| ||| |||||||||||||||| | ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  26588111 cagggacggatccagaaatttcagaaagcggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 1165550 - 1165472
Alignment:
Q  140 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaacca 219  Q
    |||||||||||| |||||||||||||||||| |||||| |||   ||| ||||| || ||||||||| ||||||||||||    
T  1165550 ccagggacagatccagaaatttcagaaagtggggtcaagctcaggtattataaa-atttatacaaaattatataaaacca 1165472  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 8354147 - 8354228
Alignment:
Q  156 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    |||||||| |||| ||||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  8354147 aaatttcaaaaagcgaggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 5701127 - 5701026
Alignment:
Q  140 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatgatg 239  Q
    |||||||  ||| |||||||||||||||||  ||||||  ||| || |||||||||| |||||||| |||| ||||||||   ||||||||||||| |||    
T  5701127 ccagggatggatccagaaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaagatatctaaaaccataaccattaaaatgataatg 5701028  T
Q  240 tc 241  Q
    ||    
T  5701027 tc 5701026  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 22349251 - 22349328
Alignment:
Q  156 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatg 233  Q
    |||||| |||||| |||||||| |||| || | |||||||| ||||||||||||||||||| || | |||||| ||||    
T  22349251 aaatttgagaaagagaggtcaagctcgttttttataaatatttatacaaaaatatataaaatcatgaccattataatg 22349328  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 7732648 - 7732745
Alignment:
Q  140 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    |||||||| ||| ||  |||| ||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  7732648 ccagggacggatccaagaattacagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  187 tcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 235  Q
    |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 32934080 - 32934158
Alignment:
Q  158 atttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 237  Q
    |||||||||| || ||||||  ||| ||||||||||||| || |||||||||||| ||||||   |||||||||||||||    
T  32934080 atttcagaaaatggggtcaagatcgtttatcataaatatttaaacaaaaatatat-aaaccatagccattaaaatgatga 32934158  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 6015873 - 6015811
Alignment:
Q  153 cagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 215  Q
    |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  6015873 cagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 6015811  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 38159313 - 38159353
Alignment:
Q  156 aaatttcagaaagtgaggtcaaactcgcttatcataaatat 196  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  38159313 aaatttcagaaagtgaggtcaagctcgtttatcataaatat 38159353  T

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