View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6562_low_11 (Length: 239)
Name: NF6562_low_11
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6562_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41499745 - 41499516
Alignment:
| Q |
1 |
tagaggttgaagttatgaatttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaatttt |
100 |
Q |
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| T |
41499745 |
tagaggttgaagttatgaatttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaatttt |
41499646 |
T |
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| Q |
101 |
ggagttgaggaaattaaatgaaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttg |
200 |
Q |
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| T |
41499645 |
ggagttgaggaaattaaatgaaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttg |
41499546 |
T |
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| Q |
201 |
aggaagttgaagaaaaaatggtttgatgat |
230 |
Q |
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| T |
41499545 |
aggaagttgaagaaaaaatggtttgatgat |
41499516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 41503901 - 41503720
Alignment:
| Q |
38 |
tgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaatgaaaagatgctggaggat |
137 |
Q |
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| T |
41503901 |
tgatggtaacaacaaaattgatgtgttaagaagtaagactggtaaactagagtctgaagttttggagttgaggaaattaaatgaaaagatggtggaggat |
41503802 |
T |
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| Q |
138 |
aataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaat |
219 |
Q |
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| T |
41503801 |
aataacgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttaaggaggttgaagaaaaaat |
41503720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 41515534 - 41515324
Alignment:
| Q |
21 |
ttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaatg |
120 |
Q |
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| T |
41515534 |
ttgaaggagaaatgttttgatggtagcaatgaaatttatgtgttaagaagaaagaatggtgaattagagtctgaaattttggagttgaggaagttgaatg |
41515435 |
T |
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| Q |
121 |
aaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaatg |
220 |
Q |
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| T |
41515434 |
aaaagaggatgggggataataatgaacttggtgtattgaggaaaatgattggtaaattggagcatgaagtttcggagttgaggaaatcgaagaagaaatg |
41515335 |
T |
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| Q |
221 |
gtttgatgatg |
231 |
Q |
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| T |
41515334 |
gttagatgatg |
41515324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 41524471 - 41524276
Alignment:
| Q |
35 |
tgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaatgaaaagatgctggag |
134 |
Q |
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| T |
41524471 |
tgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagaggatggag |
41524372 |
T |
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| Q |
135 |
gataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaatggtttgatgat |
230 |
Q |
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| T |
41524371 |
gataatactcaacttggtgtgttgagaaaaatgattggtaaattggagcatgaagcttcggagctgaggaaatcgaagaagaaatggttagatgat |
41524276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 41469829 - 41469744
Alignment:
| Q |
3 |
gaggttgaagttatgaatttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattaga |
88 |
Q |
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| T |
41469829 |
gaggttgaaattaagaatttgaaggagaaatgtgttgatagtagcaatgaagttgatgtaataagaacaaagattgttgaattaga |
41469744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 41702835 - 41702906
Alignment:
| Q |
47 |
caatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaa |
118 |
Q |
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| T |
41702835 |
caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaa |
41702906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 41702836 - 41702916
Alignment:
| Q |
141 |
aatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaatgg |
221 |
Q |
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| T |
41702836 |
aatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgg |
41702916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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