View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6562_low_12 (Length: 228)

Name: NF6562_low_12
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6562_low_12
NF6562_low_12
[»] chr5 (8 HSPs)
chr5 (1-228)||(41499741-41499968)
chr5 (65-160)||(41524604-41524699)
chr5 (51-160)||(41504281-41504390)
chr5 (47-132)||(41469933-41470018)
chr5 (50-160)||(41515659-41515769)
chr5 (171-221)||(41524749-41524799)
chr5 (171-228)||(41504440-41504497)
chr5 (172-216)||(41702500-41702544)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41499741 - 41499968
Alignment:
Q  1 ctctagttcattgttcttcttttgtaactcttgaatagtttttccattacctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41499741 ctctagttcattgttcttcttttgtaactcttgaatagtttttccattacctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaac 41499840  T
Q  101 cttgagagtctttccaagtgaaactcctctctgagtctcaaatccctactctccaaaacacacaaaatcttaacaagatcatgaataggattatcttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41499841 cttgagagtctttccaagtgaaactcctctctgagtcttaaatccctactctccaaaacacacaaaatcttaacaagatcatgaataggattatcttcaa 41499940  T
Q  201 ggttgttcttagggttggtgggtgatga 228  Q
    ||||||||||||||||||||||||||||    
T  41499941 ggttgttcttagggttggtgggtgatga 41499968  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 41524604 - 41524699
Alignment:
Q  65 tcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctctgagtctcaaatccctactctccaaaaca 160  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| | |||||||||| ||| ||||||||||||| || |||| |||||||||||    
T  41524604 tcttctcttttcttaaactcagactcagcatataaccttgagagtttctccaagtgaagctcttctctgagtctcatatacctattctccaaaaca 41524699  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 41504281 - 41504390
Alignment:
Q  51 ctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctctgagtctcaaatccctact 150  Q
    |||||||||  ||||| ||||||||| || ||||| |||||| |||||||||  ||||||| |||  ||||||||||||||| ||||||| |||||| ||    
T  41504281 ctttctcaacaatttcctctcttttcctaaactcagactcagaatgtaacctcaagagtctctccgtgtgaaactcctctctaagtctcatatccctcct 41504380  T
Q  151 ctccaaaaca 160  Q
    ||||||||||    
T  41504381 ctccaaaaca 41504390  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 41469933 - 41470018
Alignment:
Q  47 ttacctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctct 132  Q
    |||||||||||| | ||||| |||||||||||| ||||| ||||||||| || |||||| ||||| || |||||||||||||||||    
T  41469933 ttacctttctcacaaatttcctctcttttcttaaactcagactcagcatatacccttgaaagtctctctaagtgaaactcctctct 41470018  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 41515659 - 41515769
Alignment:
Q  50 cctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctctgagtctcaaatccctac 149  Q
    ||||||||| | || ||||||||||||||| ||||| ||||||| |  |||||||||||| | ||||  |||| ||| ||||||||||||| || ||||     
T  41515659 cctttctcacaaatctcttctcttttcttaaactcagactcagcgtacaaccttgagagtttctccagttgaagctcttctctgagtctcatatacctat 41515758  T
Q  150 tctccaaaaca 160  Q
    |||||||||||    
T  41515759 tctccaaaaca 41515769  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 41524749 - 41524799
Alignment:
Q  171 taacaagatcatgaataggattatcttcaaggttgttcttagggttggtgg 221  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  41524749 taacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtgg 41524799  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 41504440 - 41504497
Alignment:
Q  171 taacaagatcatgaataggattatcttcaaggttgttcttagggttggtgggtgatga 228  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||| ||||||||    
T  41504440 taacaagatcatgaatagacttatcttcaagattgttgttagagttggtcggtgatga 41504497  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 41702544 - 41702500
Alignment:
Q  172 aacaagatcatgaataggattatcttcaaggttgttcttagggtt 216  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  41702544 aacaagatcatgaatagacttatcttcaaggttgttgttagggtt 41702500  T

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