View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6562_low_2 (Length: 422)
Name: NF6562_low_2
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6562_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 18576393 - 18576007
Alignment:
| Q |
17 |
atcacacgaataagaaagcgaggcaatggcactgtctgtctaaggaataagaaagcttaactaaaactattctttttttaatcttctgcnnnnnnnngca |
116 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
18576393 |
atcacacgaataagaaagcgaggcaatgacactgtctgtctaaggaataagaaagcttaactaaaactattctttttttaatcttcttcttttttttgcc |
18576294 |
T |
|
| Q |
117 |
aaaccagcatgtccatacttcacaaaaggcttctccgtttttccatttcgtagcttacaatcgatcaaggttgccagcggattaaggggttgcttcatcc |
216 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18576293 |
aaaccagcatgtccatacttcacaaaagccttctccgtttttccatttcgtagctcacaatcgatcaaggttgccagcggattaagtggttgcttcatcc |
18576194 |
T |
|
| Q |
217 |
ttgataattcagtcttactcatcctagtctatatgtcaacattctgcagaaatcctaatcatccaaacaaaatcaatatatttatgttaaattttgaatn |
316 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576193 |
ttgataattcagtcttactcatccttgtctatatgtcaacattctgcagaaatcctaatcatccaaacaaaatcaatatatttatgttaaattttgaata |
18576094 |
T |
|
| Q |
317 |
nnnnnnnnnnngactcttaatagatctacacatgttgagtgaattggcatgttaattcattttcaaaataagatctattaagtaagt |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576093 |
aatataaaaaagactcttaatagatctacacatgttgagtgaattggcatgttaattcattttcaaaataagatctattaagtaagt |
18576007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 14442785 - 14442399
Alignment:
| Q |
17 |
atcacacgaataagaaagcgaggcaatggcactgtctgtctaaggaataagaaagcttaactaaaactattctttttttaatcttctgcnnnnnnnngca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
14442785 |
atcacacgaataagaaagcgaggcaatgacactgtctgtctaaggaataagaaagcttaactaaaactattctttttttaatcttcttcttttttttgcc |
14442686 |
T |
|
| Q |
117 |
aaaccagcatgtccatacttcacaaaaggcttctccgtttttccatttcgtagcttacaatcgatcaaggttgccagcggattaaggggttgcttcatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14442685 |
aaaccagcatgtccatacttcacaaaagtcttctccgtttttccatttcgtagctcacaatcgatcaaggttgccagcggattaagtggttgcttcatcc |
14442586 |
T |
|
| Q |
217 |
ttgataattcagtcttactcatcctagtctatatgtcaacattctgcagaaatcctaatcatccaaacaaaatcaatatatttatgttaaattttgaatn |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14442585 |
ttgataattcagtcttactcatccttgtctatatgtcaacattctgctgaaatcctaattatccaaacaaaatcaatatatttatgttaaattttgaata |
14442486 |
T |
|
| Q |
317 |
nnnnnnnnnnngactcttaatagatctacacatgttgagtgaattggcatgttaattcattttcaaaataagatctattaagtaagt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14442485 |
aatataaaaaagactcttaatagatctacacatgttgagtgaattggcatgttaattcattttcaaaataagatctattaagtaagt |
14442399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 117 - 399
Target Start/End: Original strand, 37279592 - 37279889
Alignment:
| Q |
117 |
aaaccagcatgtccatacttcacaaaaggcttctccgtttttccatttcgtagcttacaatcgatcaaggttgccagcggattaaggggttgcttcatcc |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||||||||||||| |
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| T |
37279592 |
aaaccagcctgtccatacttcacaaaaggcttctccgtttttccatttcgtagctcacggccgatcaaggttgccaacggaacaagtggttgcttcatcc |
37279691 |
T |
|
| Q |
217 |
ttgataattcagtcttactcatcctagtctatatgtcaaca-ttctgcagaaatcctaatcatcc--------------aaacaaaatcaatatatttat |
301 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
37279692 |
ttgataattcagccttactcatcctagtctataagtcaacatttctgcagaaatcctaatcatccaaacaaaattcgcaaaacaaaatcaatgtatttat |
37279791 |
T |
|
| Q |
302 |
gttaaattttgaatnnnnnnnnnnnngactcttaatagatctacacatgttgagtgaattggcatgttaattcattttcaaaataagatctattaagt |
399 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |
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| T |
37279792 |
gttaaattttgagcaaaaatccaaaagactcttaatagatctacacatgttgagtgagttggcatgttaattcattttcaaaacaagatccattaagt |
37279889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 294844 - 294894
Alignment:
| Q |
35 |
cgaggcaatggcactgtctgtctaaggaataagaaagcttaactaaaacta |
85 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
294844 |
cgaggcaatgacagtgtctgtctaaggaataagaaagcttaactaaaacta |
294894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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