View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6562_low_5 (Length: 340)
Name: NF6562_low_5
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6562_low_5 |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 19139021 - 19138716
Alignment:
| Q |
17 |
tgtggcgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattgtagtctacaactacccataataatgttccactagttttacaatga |
116 |
Q |
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| T |
19139021 |
tgtggcgtctttcgacagattttaaaagcgataaaggtgcattaagtttaaattgtagtctacaactacccataata------------ttttacaatga |
19138934 |
T |
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| Q |
117 |
ttnnnnnnnttaccccttatcaattccttgaatgagagttctcttcaaaggttacaacttcctaattccataggttagctagtattctttgaaggttttt |
216 |
Q |
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| T |
19138933 |
ttaaaaaaattaccctttatcaattccttgaattagagttctcttcaaaggttacaacttcctaattccataggtgagctagtattctttgaaggttttt |
19138834 |
T |
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| Q |
217 |
tcggacgttaatttattatcacaattaaagcatcatttattcataggatcgtgtcaagattttaagtcagcgacaactctcaggatcagttaaaccataa |
316 |
Q |
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| T |
19138833 |
tcggacgttaatttattatcacaattaaagcatcatttattcatagaatcgtgtcaagattttaagtctgtgacaactctcaggttcagttaaaccataa |
19138734 |
T |
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| Q |
317 |
tttattcacaggttctgc |
334 |
Q |
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| T |
19138733 |
tttattcgtaggttctgc |
19138716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 1177440 - 1177386
Alignment:
| Q |
17 |
tgtggcgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattg |
71 |
Q |
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| T |
1177440 |
tgtggcgtctttcgacaggttttaaaagcgataaaggtgcattaagtttaaattg |
1177386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 16177211 - 16177265
Alignment:
| Q |
17 |
tgtggcgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattg |
71 |
Q |
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| T |
16177211 |
tgtggtgtctttcaacaggttttaaatgcgataaaggtgcattaagtttaaattg |
16177265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 23540442 - 23540388
Alignment:
| Q |
17 |
tgtggcgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattg |
71 |
Q |
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| T |
23540442 |
tgtggcgtctttcgacaggttttaaaagcgataaagatgcaataagtttaaattg |
23540388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 20146131 - 20146185
Alignment:
| Q |
17 |
tgtggcgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattg |
71 |
Q |
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| T |
20146131 |
tgtggagtatttcgacaggttttaaaagcgataaaggtgcattaagtttaaattg |
20146185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 5884 - 5835
Alignment:
| Q |
22 |
cgtctttcgacatattttaaaagcaataaaggtgcattaagtttaaattg |
71 |
Q |
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| T |
5884 |
cgtctttcgacaggttttaaaagtgataaaggtgcattaagtttaaattg |
5835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 35412603 - 35412565
Alignment:
| Q |
177 |
cctaattccataggttagctagtattctttgaaggtttt |
215 |
Q |
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| T |
35412603 |
cctaattccttaggttagctaatattctttgaaggtttt |
35412565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 7639712 - 7639753
Alignment:
| Q |
212 |
ttttttcggacgttaatttattatcacaattaaagcatcatt |
253 |
Q |
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| T |
7639712 |
ttttttccgacgttaatttattataacaattaaatcatcatt |
7639753 |
T |
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