View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6562_low_8 (Length: 277)
Name: NF6562_low_8
Description: NF6562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6562_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 43031160 - 43030896
Alignment:
| Q |
13 |
aaaatcaaggcagatcatatccgtgaaccaagtatagctcactaatataatatgtgtaacaaaaatttaaagaataaagtaaacttaacaggctatatgg |
112 |
Q |
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| T |
43031160 |
aaaatcaaggcagatcatatccgtgaaccaagtatagctcactaatataatatgtgtaacaaaaattaaaaaaataaagtaaacttaacaggctatatgg |
43031061 |
T |
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| Q |
113 |
attaaattggtagcattaactaatataatctataaaaatgtcactactaccactaaataaaacagtagctatcatcatggagatgatgaaggaatatttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43031060 |
attaaattggtagcattaactaatataatctataaaaatgtcactactaccactaaataaaacagtagctatcatcatggagatgatgaaggaatatttg |
43030961 |
T |
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| Q |
213 |
tgtgcttagaagtacttgcagccaaagtaccacaaataagaggttttggggtaggaattctaaga |
277 |
Q |
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| T |
43030960 |
tgtacttagaagtacttgcagccaaagtaccacaaataagaggttttggggtaggaattctaaga |
43030896 |
T |
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