View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_high_1 (Length: 838)

Name: NF6563_high_1
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_high_1
NF6563_high_1
[»] chr1 (2 HSPs)
chr1 (21-479)||(28675534-28675992)
chr1 (524-823)||(28676034-28676337)
[»] chr7 (3 HSPs)
chr7 (213-252)||(40638109-40638148)
chr7 (665-701)||(27980805-27980841)
chr7 (445-479)||(43447285-43447319)
[»] chr6 (2 HSPs)
chr6 (663-707)||(33419176-33419220)
chr6 (662-701)||(26314645-26314684)
[»] scaffold0022 (1 HSPs)
scaffold0022 (662-709)||(90844-90891)
[»] chr8 (2 HSPs)
chr8 (663-710)||(3677786-3677833)
chr8 (668-702)||(29519203-29519237)
[»] chr5 (2 HSPs)
chr5 (663-702)||(38749575-38749614)
chr5 (666-711)||(15405070-15405115)
[»] chr3 (2 HSPs)
chr3 (667-710)||(41319326-41319369)
chr3 (662-703)||(21419466-21419507)
[»] scaffold0004 (1 HSPs)
scaffold0004 (663-696)||(101014-101047)
[»] chr4 (1 HSPs)
chr4 (668-709)||(50848320-50848361)


Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 28675534 - 28675992
Alignment:
Q  21 tctgaaacttttgaagctttaccttttcttcgaaatccaaagcagcaaactgaatccttcctaacaaaatggcaacaaaagagagtatgtgggacccacc 120  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675534 tctgaaacttttgaagctttactttttcttcgaaatccaaagcagcaaactgaatccttcctaacaaaatggcaacaaaagagagtatgtgggacccacc 28675633  T
Q  121 aaaaacggcagcggcatttactcggagctccgtcaccggaggagggacgaccctttttagtggtgggttgtttggaggagcgtttaactcgaacttgacc 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675634 aaaaagggcagcggcatttactcggagctccgtcaccggaggagggacgaccctttttagtggtgggttgtttggaggagcgtttaactcgaacttgacc 28675733  T
Q  221 catgcaagtgactttaggggaagaaggttctttggtttcaatggaagtagtgttctttttccttaggattaagaacatagagttagactttgatcttgtt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675734 catgcaagtgactttaggggaagaaggttctttggtttcaatggaagtagtgttctttttccttaggattaagaacatagagttagactttgatcttgtt 28675833  T
Q  321 cttcctctgcttttgtttgctgcatttgattttaagaatctcatcaatggtggtggaaacttttccattctacctggactagaaataggttttgcagata 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28675834 cttcctctgcttttgtttgctgcatttgattttaagaatctcatcaatggtggtggaaacttttccattctacctggactagaaatgggttttgcagata 28675933  T
Q  421 gcttcatgatgcctttgtttgtttgtagggtaaccgttggtggagaaaggaaagagaag 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675934 gcttcatgatgcctttgtttgtttgtagggtaaccgttggtggagaaaggaaagagaag 28675992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 524 - 823
Target Start/End: Original strand, 28676034 - 28676337
Alignment:
Q  524 cactttttgtgaaatttggtgcactccattttttgttgtt----gttgtggccatgctttagtgtgaagcgctgactcttctcaaattaagtgcttcttt 619  Q
    ||||||||||||||||||||||||| |||||||| || ||    |||||||||||||||||||| ||||||| ||||||||||||||||| ||  |||||    
T  28676034 cactttttgtgaaatttggtgcacttcattttttttttttttttgttgtggccatgctttagtgggaagcgcggactcttctcaaattaaatgtgtcttt 28676133  T
Q  620 gtgtaggataagatatgtatttaatatcgatatgatat-aacttatataattacattgaattatatcattttttaaaattattaatggtgtcatatctaa 718  Q
    |||||||||||||||||| ||||| ||||||||||||| ||  |||||||||||| | |||||||| ||||| | |||||| |||||||||||||||||     
T  28676134 gtgtaggataagatatgtgtttaacatcgatatgatatcaatatatataattacacttaattatattattttcttaaatta-taatggtgtcatatctag 28676232  T
Q  719 tgtatgtatcttgtatctctatgtgtgtttcatagcattctagatatgatgcaccaaattgtctttttctttgagaaaaaataagtattttttcttttca 818  Q
    ||||| |||||||||||| |||  ||| ||||||||||||||||||| ||  | ||||||||||||||  || |  ||||||||||||||||||||||||    
T  28676233 tgtatttatcttgtatctgtatccgtgcttcatagcattctagatataatcgagcaaattgtcttttttgtttaagaaaaataagtattttttcttttca 28676332  T
Q  819 gttat 823  Q
    |||||    
T  28676333 gttat 28676337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 40638148 - 40638109
Alignment:
Q  213 acttgacccatgcaagtgactttaggggaagaaggttctt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40638148 acttgacccatgcaagtgactttaggggaagaaggttctt 40638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 701
Target Start/End: Complemental strand, 27980841 - 27980805
Alignment:
Q  665 ataattacattgaattatatcattttttaaaattatt 701  Q
    |||||||||||||||||| ||||||||||||||||||    
T  27980841 ataattacattgaattatgtcattttttaaaattatt 27980805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 479
Target Start/End: Original strand, 43447285 - 43447319
Alignment:
Q  445 gtagggtaaccgttggtggagaaaggaaagagaag 479  Q
    |||||||||||||||| ||||||||||||||||||    
T  43447285 gtagggtaaccgttggaggagaaaggaaagagaag 43447319  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 707
Target Start/End: Complemental strand, 33419220 - 33419176
Alignment:
Q  663 atataattacattgaattatatcattttttaaaattattaatggt 707  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||    
T  33419220 atataattacattgaattatatcaatttttcaaattattagtggt 33419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 701
Target Start/End: Original strand, 26314645 - 26314684
Alignment:
Q  662 tatataattacattgaattatatcattttttaaaattatt 701  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  26314645 tatataattacattgaattatatgattttttcaaattatt 26314684  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 709
Target Start/End: Complemental strand, 90891 - 90844
Alignment:
Q  662 tatataattacattgaattatatcattttttaaaattattaatggtgt 709  Q
    |||||||||||| |||||||||| ||||| | ||||||||||||||||    
T  90891 tatataattacactgaattatatgattttctcaaattattaatggtgt 90844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 710
Target Start/End: Complemental strand, 3677833 - 3677786
Alignment:
Q  663 atataattacattgaattatatcattttttaaaattattaatggtgtc 710  Q
    |||||||||||| ||||||| | ||||||||||||||||||| |||||    
T  3677833 atataattacatagaattatgtgattttttaaaattattaattgtgtc 3677786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 702
Target Start/End: Complemental strand, 29519237 - 29519203
Alignment:
Q  668 attacattgaattatatcattttttaaaattatta 702  Q
    ||||||||||||||||| |||||||||||||||||    
T  29519237 attacattgaattatatgattttttaaaattatta 29519203  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 702
Target Start/End: Original strand, 38749575 - 38749614
Alignment:
Q  663 atataattacattgaattatatcattttttaaaattatta 702  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  38749575 atataattacattgaattatgtcattttttcaaattatta 38749614  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 711
Target Start/End: Original strand, 15405070 - 15405115
Alignment:
Q  666 taattacattgaattatatcattttttaaaattattaatggtgtca 711  Q
    ||||||||||||||||||| ||||||| ||||||||| | ||||||    
T  15405070 taattacattgaattatatgattttttcaaattattagttgtgtca 15405115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 710
Target Start/End: Original strand, 41319326 - 41319369
Alignment:
Q  667 aattacattgaattatatcattttttaaaattattaatggtgtc 710  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||    
T  41319326 aattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 703
Target Start/End: Original strand, 21419466 - 21419507
Alignment:
Q  662 tatataattacattgaattatatcattttttaaaattattaa 703  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21419466 tatataattacattgaattatattattttcttaaattattaa 21419507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 696
Target Start/End: Complemental strand, 101047 - 101014
Alignment:
Q  663 atataattacattgaattatatcattttttaaaa 696  Q
    |||||||||||||||||||| |||||||||||||    
T  101047 atataattacattgaattatgtcattttttaaaa 101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 709
Target Start/End: Original strand, 50848320 - 50848361
Alignment:
Q  668 attacattgaattatatcattttttaaaattattaatggtgt 709  Q
    |||||| |||||||||||||||||| ||||||||| ||||||    
T  50848320 attacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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