View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_10 (Length: 534)
Name: NF6563_high_10
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 12231534 - 12231821
Alignment:
| Q |
19 |
aaacacgatatcacgcctcaacttatctgcaacttatagcacaaacgcttattattataaacagttatttttataacaaaa--taaaataaagtaaaatt |
116 |
Q |
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| T |
12231534 |
aaacacgacatcacgcatcaacttatctgcaacttatagcacaaacgcttattattataaaca-ttatttctataacaaaaaataaaataaagtaaaatt |
12231632 |
T |
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| Q |
117 |
gcaataagctgtttttataagctattttt-gataacttatgnnnnnnnnnnnnnnnnncagcttaagaaccacaagttctcctcccaaacagtctcagga |
215 |
Q |
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| T |
12231633 |
gcaataagctgcttttataagctattttttgataacttatgaaaaaataaactaaacacatcttaagaaccacaagttctcctcccaaacagtctcagga |
12231732 |
T |
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| Q |
216 |
atttatgccaatagataaactcaaataagtttcataattttatgcaacttatgtcaatagataaacagctcaaataagtgattatactt |
304 |
Q |
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| T |
12231733 |
atttataccaatagataaactcaaataagtttcataattatattcaacttatgccaatagataaacagctcaaataagtgattatactt |
12231821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 319 - 459
Target Start/End: Original strand, 12231807 - 12231943
Alignment:
| Q |
319 |
taagtgattatacttaatcacttctatttttctcaaaattattatctgtttctagtttctacatatcggtcagcaaaacacacaactaaaattgataatc |
418 |
Q |
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| T |
12231807 |
taagtgattatacttaatcacttctatttttctcaaaattattatctgtttctagtttctacatatcggtcagtaaaacacacaactaaacttgataatc |
12231906 |
T |
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| Q |
419 |
ataatcataatcatgtttctttgattaatttttcaaattaa |
459 |
Q |
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| T |
12231907 |
ataatcataatcatgtttct----ttaatttttcaaattaa |
12231943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 523
Target Start/End: Original strand, 12231952 - 12231992
Alignment:
| Q |
483 |
acgcgagtcttgaattaaagaaagaaagttaccttgttcat |
523 |
Q |
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| T |
12231952 |
acgcgaatcttgaattaaagaaagaaagataccttgttcat |
12231992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 6167352 - 6167316
Alignment:
| Q |
120 |
ataagctgtttttataagctatttttgataacttatg |
156 |
Q |
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| T |
6167352 |
ataagctgtttttataagctattttggagaacttatg |
6167316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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