View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_high_11 (Length: 529)

Name: NF6563_high_11
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_high_11
NF6563_high_11
[»] chr8 (13 HSPs)
chr8 (1-511)||(43036741-43037253)
chr8 (1-51)||(15213105-15213155)
chr8 (1-46)||(3303475-3303520)
chr8 (1-54)||(4731977-4732029)
chr8 (3-54)||(6599286-6599336)
chr8 (3-54)||(6674739-6674789)
chr8 (1-51)||(4743027-4743077)
chr8 (1-46)||(41366423-41366467)
chr8 (1-52)||(12702430-12702480)
chr8 (3-54)||(18105873-18105923)
chr8 (1-51)||(5689586-5689635)
chr8 (1-51)||(30143659-30143708)
chr8 (1-53)||(19491501-19491552)
[»] chr4 (18 HSPs)
chr4 (1-59)||(12739345-12739403)
chr4 (1-51)||(26175436-26175486)
chr4 (1-54)||(12743725-12743778)
chr4 (2-46)||(52467162-52467206)
chr4 (1-44)||(37740944-37740987)
chr4 (1-52)||(9927257-9927308)
chr4 (4-51)||(36994851-36994898)
chr4 (1-51)||(48893443-48893492)
chr4 (1-54)||(46147192-46147245)
chr4 (1-54)||(52095159-52095211)
chr4 (1-46)||(56178441-56178485)
chr4 (2-51)||(31474466-31474512)
chr4 (1-52)||(50262486-50262537)
chr4 (1-52)||(52082462-52082512)
chr4 (5-56)||(54199703-54199753)
chr4 (1-51)||(36463196-36463245)
chr4 (1-46)||(47038221-47038265)
chr4 (18-54)||(5350235-5350271)
[»] chr7 (21 HSPs)
chr7 (1-54)||(6430446-6430499)
chr7 (1-53)||(14069631-14069683)
chr7 (1-53)||(14379659-14379711)
chr7 (1-53)||(18126965-18127017)
chr7 (1-52)||(23555360-23555411)
chr7 (1-52)||(47673743-47673794)
chr7 (1-46)||(43864563-43864608)
chr7 (1-51)||(26417635-26417685)
chr7 (1-51)||(31732768-31732818)
chr7 (1-51)||(47675936-47675986)
chr7 (1-54)||(4510336-4510389)
chr7 (1-54)||(4512178-4512231)
chr7 (1-52)||(41648813-41648863)
chr7 (1-51)||(19502497-19502547)
chr7 (1-51)||(22270271-22270321)
chr7 (1-51)||(38671025-38671074)
chr7 (1-46)||(2360777-2360822)
chr7 (1-53)||(4586480-4586532)
chr7 (1-51)||(1113971-1114021)
chr7 (5-51)||(41317238-41317284)
chr7 (1-46)||(48489750-48489794)
[»] chr2 (17 HSPs)
chr2 (1-54)||(11690806-11690859)
chr2 (3-53)||(36317811-36317861)
chr2 (1-54)||(723544-723596)
chr2 (1-52)||(34139572-34139622)
chr2 (1-52)||(36987874-36987924)
chr2 (1-51)||(11151395-11151445)
chr2 (1-51)||(42362664-42362713)
chr2 (2-51)||(24885905-24885953)
chr2 (1-57)||(33162248-33162303)
chr2 (3-54)||(17057166-17057216)
chr2 (3-54)||(17085149-17085199)
chr2 (1-51)||(6594804-6594853)
chr2 (1-51)||(26354128-26354176)
chr2 (1-51)||(29868187-29868237)
chr2 (1-51)||(36773877-36773926)
chr2 (1-43)||(38312559-38312600)
chr2 (2-51)||(2334218-2334266)
[»] chr6 (4 HSPs)
chr6 (1-52)||(602902-602953)
chr6 (1-51)||(26954091-26954140)
chr6 (1-53)||(14521476-14521527)
chr6 (1-54)||(17758351-17758405)
[»] chr3 (18 HSPs)
chr3 (1-52)||(29813380-29813431)
chr3 (5-55)||(4160055-4160105)
chr3 (1-52)||(29196188-29196239)
chr3 (1-59)||(23391704-23391762)
chr3 (1-54)||(22834804-22834856)
chr3 (1-54)||(23410128-23410181)
chr3 (1-45)||(39153170-39153214)
chr3 (1-52)||(5236256-5236306)
chr3 (1-54)||(29811187-29811240)
chr3 (1-54)||(40734816-40734868)
chr3 (1-52)||(761163-761212)
chr3 (4-51)||(40913599-40913646)
chr3 (1-51)||(9666270-9666319)
chr3 (16-54)||(44330950-44330988)
chr3 (6-52)||(44700283-44700328)
chr3 (1-54)||(32891409-32891461)
chr3 (19-51)||(21350811-21350843)
chr3 (5-53)||(51399137-51399184)
[»] chr1 (17 HSPs)
chr1 (1-52)||(28220025-28220076)
chr1 (1-54)||(28223218-28223271)
chr1 (5-54)||(37559661-37559710)
chr1 (1-52)||(8550583-8550633)
chr1 (1-44)||(13137787-13137830)
chr1 (1-51)||(833970-834019)
chr1 (1-51)||(37503362-37503411)
chr1 (1-46)||(30476251-30476296)
chr1 (1-53)||(23555069-23555120)
chr1 (1-45)||(28265365-28265408)
chr1 (1-52)||(40122000-40122050)
chr1 (1-55)||(10925541-10925594)
chr1 (4-54)||(19752985-19753035)
chr1 (1-51)||(45644158-45644207)
chr1 (1-54)||(31659557-31659609)
chr1 (1-53)||(3846919-3846970)
chr1 (1-53)||(41361229-41361280)
[»] chr5 (15 HSPs)
chr5 (1-51)||(40147560-40147610)
chr5 (1-54)||(534077-534130)
chr5 (1-53)||(3075547-3075599)
chr5 (1-52)||(30682721-30682772)
chr5 (1-46)||(32637142-32637187)
chr5 (1-52)||(31183292-31183342)
chr5 (1-52)||(42426034-42426085)
chr5 (1-44)||(42428237-42428280)
chr5 (1-51)||(13488519-13488569)
chr5 (1-51)||(28750455-28750505)
chr5 (1-51)||(39468348-39468398)
chr5 (1-46)||(538339-538384)
chr5 (1-64)||(19806681-19806742)
chr5 (1-52)||(5887234-5887284)
chr5 (1-51)||(38747303-38747353)
[»] scaffold0176 (1 HSPs)
scaffold0176 (2-54)||(17790-17843)
[»] scaffold1668 (1 HSPs)
scaffold1668 (1-51)||(1301-1351)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-52)||(20215-20264)


Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 43036741 - 43037253
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattttcatacatttacttgtagatatttttatttgcaaagtatattggt 100  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43036741 ccacacatcattttttgtattggtgtgagttttgagtccaaattcataacaattttcatacatttacttgtagatatttttatttgcaaagtatattggt 43036840  T
Q  101 agatattagcaacaataaagtgtcattgtcaatcaaattttccattccaaaattcgcccacaccatagaagaagnnnnnnntgtacgaaaatgaaatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  43036841 agatattagcaacaataaagtgtcattgtcaatcaaattttccattccaaaattcgcccacaccatagaagaagaaaaaaatgtacgaaaatgaaatatt 43036940  T
Q  201 ggtggtgtgtggtgagtgccagttttcatggttcattcattcaattgaacagaaaaaggaaagaaaacaacagaaagtgatgatgtctgccaacgaggaa 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43036941 ggtggtgtgtggtcagtgccagttttcatggttcattcattcaattgaacagaaaaaggaaagaaaacaacagaaagtgatgatgtctgccaacgaggaa 43037040  T
Q  301 agaaacatgaaaatgaaataatttagttgaaggaggatctcccacccaccaataattttgcaaaatatccaaacacaaatacagtagatactttcatttc 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43037041 agaaacatgaaaatgaaataatttagttgaaggaggacctcccacccaccaataattttgcaaaatatccaaacacaaatacagtagatactttcatttc 43037140  T
Q  401 atgcagtcatggtattttaatcagatgg--tataatctttatattttaattttaaaataccgaactaaacttgtttaagcaaattaaaatgaaagaatga 498  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43037141 atgcagtcatggtattttaatcagatggtatataatctttagattttaattttaaaataccgaactaaacttgtttaagcaaattaaaatgaaagaatga 43037240  T
Q  499 cttactgggaatg 511  Q
    |||||||||||||    
T  43037241 cttactgggaatg 43037253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15213105 - 15213155
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  15213105 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3303520 - 3303475
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  3303520 ccacacatcatagtttgtattggtgtgagatttgagtccgaattca 3303475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4731977 - 4732029
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  4731977 ccacacatcattgtttgtattggtgtga-ttttgagttcgaattcacaacaatt 4732029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 6599286 - 6599336
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  6599286 acacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaatt 6599336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 6674739 - 6674789
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  6674739 acacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaatt 6674789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4743077 - 4743027
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||| || ||||||||||||||||| |||||||||||||||| ||||    
T  4743077 ccacacattatagtttgtattggtgtgagatttgagtccgaattcacaaca 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41366467 - 41366423
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||    
T  41366467 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattca 41366423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12702480 - 12702430
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||| |||||    
T  12702480 ccacacatcatagtttgtattgatgtga-ttttgagtccgaattcacaacaa 12702430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 18105923 - 18105873
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||| ||||||||| |||||| ||||||||| |||||||||||||||    
T  18105923 acacatcatagtttgtattagtgtga-ttttgagtctgaattcataacaatt 18105873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5689586 - 5689635
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  5689586 ccacacatcatagtttgtattggtgtga-ttttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30143659 - 30143708
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  30143659 ccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19491552 - 19491501
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| |||| |||||||  |||||||||||||||||||| ||||||    
T  19491552 ccacacatcatagttt-tattggttagagttttgagtccgaattcacaacaat 19491501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12739403 - 12739345
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattttcat 59  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  12739403 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaatattcat 12739345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26175486 - 26175436
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26175486 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12743778 - 12743725
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  12743778 ccacacaacatagtttgtattggtgtgagttttgagtccgaattcacaacaatt 12743725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 52467206 - 52467162
Alignment:
Q  2 cacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  52467206 cacacatcatagtttgtattggtgtgagttttgagtccgaattca 52467162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37740944 - 37740987
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaatt 44  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  37740944 ccacacatcatagtttgtattggtgtgagttttgagtccgaatt 37740987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9927308 - 9927257
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||| |||||    
T  9927308 ccacacatcatagtttatattggtgcgagttttgagtccgaattcacaacaa 9927257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 36994851 - 36994898
Alignment:
Q  4 cacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||    
T  36994851 cacatcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48893492 - 48893443
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  48893492 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46147245 - 46147192
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| ||||| |||||||||||||||||| | ||||||| |||||||    
T  46147245 ccacacatcatagtttgcattggtgtgagttttgaggcggaattcacaacaatt 46147192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52095211 - 52095159
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||| |||||||    
T  52095211 ccacacgtcatagtttgtattggtgtga-ttttgagtccgaattcacaacaatt 52095159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 56178485 - 56178441
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||    
T  56178485 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattca 56178441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 31474466 - 31474512
Alignment:
Q  2 cacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||    
T  31474466 cacacatcattgtttgtattggtgtga---ttgagtccgaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50262537 - 50262486
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||| |||||    
T  50262537 ccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacaa 50262486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 52082512 - 52082462
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||| |||||    
T  52082512 ccacacatcataatttgtattggtgtga-ttttgagtccgaattcacaacaa 52082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 54199753 - 54199703
Alignment:
Q  5 acatcattgtttgtattggtgtgagttttgagtccgaattcataacaatttt 56  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||| ||||    
T  54199753 acatcatcgtttgtattggtgtga-ttttgagtccgaattcacaacagtttt 54199703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36463245 - 36463196
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  36463245 ccacacatcatagtttgtattagtgtga-ttttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47038265 - 47038221
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||    
T  47038265 ccacacatcatagtttgtattggtgtga-ttttgagtccaaattca 47038221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 5350235 - 5350271
Alignment:
Q  18 tattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||||||| |||||||||||||||| |||||||    
T  5350235 tattggtgtgagatttgagtccgaattcacaacaatt 5350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6430446 - 6430499
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  6430446 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaatt 6430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14069683 - 14069631
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  14069683 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaat 14069631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14379711 - 14379659
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  14379711 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaat 14379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18126965 - 18127017
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  18126965 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaat 18127017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23555360 - 23555411
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  23555360 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 23555411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47673794 - 47673743
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  47673794 ccacacatcatagtttgtattggtgtgagttttgtgtccgaattcataacaa 47673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43864563 - 43864608
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  43864563 ccacacatcatagtttgtattggtgtgagttttgagtccgaattca 43864608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26417635 - 26417685
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  26417635 ccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31732818 - 31732768
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  31732818 ccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaaca 31732768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47675986 - 47675936
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  47675986 ccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4510389 - 4510336
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||| |||||||    
T  4510389 ccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaacaatt 4510336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4512231 - 4512178
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||| |||||||    
T  4512231 ccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaacaatt 4512178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41648863 - 41648813
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  41648863 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 41648813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19502497 - 19502547
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  19502497 ccacacatcatagtttgtattagtgtgagttttgagtctgaattcacaaca 19502547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22270271 - 22270321
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||| |||||  |||||||||||||||||||||    
T  22270271 ccacacatcatagtttgtattgctgtgaaatttgagtccgaattcataaca 22270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38671074 - 38671025
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  38671074 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2360822 - 2360777
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||    
T  2360822 ccacacatcatagtttgtattggtgtgaattttgagtccaaattca 2360777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4586480 - 4586532
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||||| ||||||    
T  4586480 ccacacatcatagtttacattggtgtgagatttgagtccgaattcacaacaat 4586532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1113971 - 1114021
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||| |||||||||||| || ||||||| ||||    
T  1113971 ccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 41317284 - 41317238
Alignment:
Q  5 acatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| ||||    
T  41317284 acatcatagtttgtattggtgtgagatttgagttcgaattcacaaca 41317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48489750 - 48489794
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  48489750 ccacacatcatagttggtattggtgtga-ttttgagtccgaattca 48489794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11690806 - 11690859
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  11690806 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaatt 11690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 36317861 - 36317811
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  36317861 acacatcattgtttgtattggtgtgagttttgagtccaaattcacaacaat 36317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 723596 - 723544
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  723596 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaatt 723544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34139622 - 34139572
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  34139622 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 34139572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36987924 - 36987874
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  36987924 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 36987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11151445 - 11151395
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||| ||||    
T  11151445 ccacacatcatagtttgtattggtatgagttttgagttcgaattcacaaca 11151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42362664 - 42362713
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  42362664 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24885905 - 24885953
Alignment:
Q  2 cacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  24885905 cacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33162303 - 33162248
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattttc 57  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||| |||| |||||    
T  33162303 ccacacatcatagtttgtattgatgtga-ttttgagtccgaattcacaacacttttc 33162248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 17057216 - 17057166
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  17057216 acacatcatattttgtattggtgtga-ttttgagtccgaattcacaacaatt 17057166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 17085199 - 17085149
Alignment:
Q  3 acacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  17085199 acacatcatattttgtattggtgtga-ttttgagtccgaattcacaacaatt 17085149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6594853 - 6594804
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||| ||||    
T  6594853 ccacacatcatagtttgtattggtgtga-ttttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26354128 - 26354176
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  26354128 ccacacatcatagttt-tattggtgtga-ttttgagtccgaattcataaca 26354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29868187 - 29868237
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||| |||||  |||||||||||||||| ||||    
T  29868187 ccacacatcatagtttgtattgctgtgaaatttgagtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36773877 - 36773926
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||| ||||    
T  36773877 ccacacatcatagtttgtattggtgtga-ttttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38312559 - 38312600
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaat 43  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  38312559 ccacacatcattgtttatattggtgtga-ttttgagtccgaat 38312600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 2334266 - 2334218
Alignment:
Q  2 cacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  2334266 cacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 602953 - 602902
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  602953 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 602902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26954140 - 26954091
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  26954140 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14521527 - 14521476
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||| ||||||    
T  14521527 ccacacatcatagtttc-attggtgtgagttttgagtccgaattcacaacaat 14521476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17758351 - 17758405
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagt-ccgaattcataacaatt 54  Q
    ||||||||||| ||||||||||||||||  ||||||| ||||||||| |||||||    
T  17758351 ccacacatcatagtttgtattggtgtgaaatttgagtcccgaattcacaacaatt 17758405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29813380 - 29813431
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  29813380 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 29813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 4160105 - 4160055
Alignment:
Q  5 acatcattgtttgtattggtgtgagttttgagtccgaattcataacaattt 55  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaacaattt 4160055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29196239 - 29196188
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  29196239 ccacacatcatagtttgtattggtgtgagatttgagtccgaattcacaacaa 29196188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23391762 - 23391704
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattttcat 59  Q
    ||||||||||| |||||||||||||||||||||| || |||||||| ||||||| ||||    
T  23391762 ccacacatcatagtttgtattggtgtgagttttgtgttcgaattcacaacaattatcat 23391704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22834856 - 22834804
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  22834856 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaatt 22834804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23410181 - 23410128
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  23410181 ccacacatcatagtttgtattgatgtgagttttgtgtccgaattcacaacaatt 23410128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39153214 - 39153170
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattc 45  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  39153214 ccacacatcatagtttgtattggtgtgagttttgagcccgaattc 39153170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5236306 - 5236256
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  5236306 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 5236256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29811187 - 29811240
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||| |||||  |||||||||||||||||||||||| |||||||| |||||||    
T  29811187 ccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaacaatt 29811240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40734816 - 40734868
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||    
T  40734816 ccacacatcatagtttgtattggtgtga-ttttgagaccgaattcacaacaatt 40734868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 761163 - 761212
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||| |||||    
T  761163 ccacacatcatagtttgtattggtgtga--tttgagtccgaattcacaacaa 761212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 40913599 - 40913646
Alignment:
Q  4 cacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  40913599 cacattattgtttgtattggtgtgaaatttgagtccgaattcacaaca 40913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9666319 - 9666270
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||| ||||    
T  9666319 ccacagatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 44330950 - 44330988
Alignment:
Q  16 tgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  44330950 tgtactggtgtgagttttgagtccgaattcacaacaatt 44330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 44700328 - 44700283
Alignment:
Q  6 catcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||    
T  44700328 catcatagtttgtattggtgtga-ttttgagtccgaattcaaaacaa 44700283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32891409 - 32891461
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| ||||  |||||||||||||||||||||||| ||| |||||||    
T  32891409 ccacacatcatagtttc-attggtgtgagttttgagtccgaagtcacaacaatt 32891461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 21350843 - 21350811
Alignment:
Q  19 attggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||||||||||||||||||||| ||||    
T  21350843 attggtgtgagttttgagtccgaattcacaaca 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 51399137 - 51399184
Alignment:
Q  5 acatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||| |||||||||||| ||| ||||||||||||||||| ||||||    
T  51399137 acatcatagtttgtattggtatga-ttttgagtccgaattcacaacaat 51399184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28220076 - 28220025
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28220076 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 28220025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28223271 - 28223218
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  28223271 ccacacatcatagtttgtattggtctgagttttgagtccgaattcacaacaatt 28223218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 37559710 - 37559661
Alignment:
Q  5 acatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  37559710 acatcatagtttatattggtgtgagttttgagtccgaattcacaacaatt 37559661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8550633 - 8550583
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  8550633 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 8550583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13137830 - 13137787
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaatt 44  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  13137830 ccacacatcataatttgtattggtgtgagttttgagtccgaatt 13137787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 834019 - 833970
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  834019 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37503411 - 37503362
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  37503411 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30476296 - 30476251
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||    
T  30476296 ccacacattatagtttgtattggtgtgagttttgagttcgaattca 30476251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23555120 - 23555069
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    |||||||||||||||| |||||||| || ||||||||||||||||| ||||||    
T  23555120 ccacacatcattgtttctattggtgcga-ttttgagtccgaattcacaacaat 23555069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28265408 - 28265365
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattc 45  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||    
T  28265408 ccacacatcatagtttgtattggtgtga-ttttgagtccgaattc 28265365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40122050 - 40122000
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||| |||||    
T  40122050 ccacgcatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 40122000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10925541 - 10925594
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattt 55  Q
    ||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  10925541 ccacacaacatagtttgtattgttgtga-ttttgagtccgaattcacaacaattt 10925594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 19752985 - 19753035
Alignment:
Q  4 cacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||| ||||||||||||||||  |||||||| ||||||| |||||||    
T  19752985 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacaatt 19753035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45644207 - 45644158
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  45644207 ccacacatcatagtttgtatttgtgtga-ttttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31659557 - 31659609
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    |||||||||||  ||| ||||||||||| ||||||||||||||||| |||||||    
T  31659557 ccacacatcatattttatattggtgtga-ttttgagtccgaattcacaacaatt 31659609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3846970 - 3846919
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| ||||||||| || ||| ||||||||||||||||| ||||||    
T  3846970 ccacacatcatagtttgtattagtatga-ttttgagtccgaattcacaacaat 3846919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41361229 - 41361280
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| |||| |||||||  |||||||||||||||||||| ||||||    
T  41361229 ccacacatcatagttt-tattggttagagttttgagtccgaattcacaacaat 41361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40147560 - 40147610
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  40147560 ccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 534077 - 534130
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaatt 54  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  534077 ccacacatcatagtttctattggtgtgagttttgagtccgaattcacaacaatt 534130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3075599 - 3075547
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaat 53  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  3075599 ccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaacaat 3075547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30682772 - 30682721
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  30682772 ccacacatcatagtttgtattggtgtgagttttgagtccgtattcacaacaa 30682721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32637142 - 32637187
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32637142 ccacacatcatagtttgtattggtgtgagttttgaatccgaattca 32637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31183292 - 31183342
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  31183292 ccacacatcatggtttgtattggtgtga-ttttgagtccgaattcacaacaa 31183342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42426085 - 42426034
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||| |||||    
T  42426085 ccacacatcatagtttgtatttgtgtgagttttgagttcgaattcacaacaa 42426034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42428280 - 42428237
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaatt 44  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  42428280 ccacacatcatagtttgtattggtgtgagttttgagttcgaatt 42428237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13488519 - 13488569
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||||  |||||||||||||||| |||||||||||||||| ||||    
T  13488519 ccacacatcatattttgtattggtgtgagatttgagtccgaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28750505 - 28750455
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    |||||||||||  |||||||||||||||||||||||||| |||||| ||||    
T  28750505 ccacacatcataatttgtattggtgtgagttttgagtccaaattcacaaca 28750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39468398 - 39468348
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||| ||||    
T  39468398 ccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaaca 39468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 538339 - 538384
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattca 46  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||    
T  538339 ccacacatcatagtttatattggtgtgagttttgagtctgaattca 538384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19806681 - 19806742
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaattttcatacatt 64  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||| |||| |||  |||||||    
T  19806681 ccacacatcatagtttgtattggtg--agttttgagtccgaattcacaacattttggatacatt 19806742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5887284 - 5887234
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||| |||||    
T  5887284 ccacatatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaa 5887234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38747303 - 38747353
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| ||||||||||||||||  ||||||||| |||||| ||||    
T  38747303 ccacacatcatagtttgtattggtgtgaaatttgagtccaaattcacaaca 38747353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 17843 - 17790
Alignment:
Q  2 cacacatcattgtttgtattggtgtgagttttgagtcc-gaattcataacaatt 54  Q
    |||||||||| ||||||||||||||||  ||||||||| |||||||||||||||    
T  17843 cacacatcatagtttgtattggtgtgaaatttgagtccagaattcataacaatt 17790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1351 - 1301
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataaca 51  Q
    ||||||||||| | |||||||||||||||||||| || |||||||| ||||    
T  1351 ccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaaca 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20264 - 20215
Alignment:
Q  1 ccacacatcattgtttgtattggtgtgagttttgagtccgaattcataacaa 52  Q
    ||||||||||| |||||||||||| ||||  ||||||||||||||| |||||    
T  20264 ccacacatcatagtttgtattggtatgag--ttgagtccgaattcacaacaa 20215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University