View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_14 (Length: 482)
Name: NF6563_high_14
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 63 - 277
Target Start/End: Complemental strand, 38934793 - 38934578
Alignment:
| Q |
63 |
cattagcgtggatagatgaataatgtcgagttttgagcaaaatatatagttttcatttttatacacaataaaacaaaatgggctgtattgctnnnnnnnn |
162 |
Q |
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| T |
38934793 |
cattagcgtggatagatgagtaatgtcgagttttgagcaaaatatatagttttcatttttatatacaataaaacaaaatgg-ctgtattgctaaaaaaaa |
38934695 |
T |
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| Q |
163 |
--ggctgtataatttctatgaaattcatgcatataaattcaatgttaccatactcacttaatcaccattaagctatctattgtttaatttcttgttgatt |
260 |
Q |
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| T |
38934694 |
aaggctgtataatttctatgaaattcatgcatataaattcaatgttaccatacccacttaatcaccattaagctatctattgtttaatttcttgttgatt |
38934595 |
T |
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| Q |
261 |
cataatttagatagtag |
277 |
Q |
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| T |
38934594 |
cataatttagatagtag |
38934578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 278 - 467
Target Start/End: Complemental strand, 38934534 - 38934342
Alignment:
| Q |
278 |
ctagtactagttttcagattacaacttctatactatccctatttaatcttatcatcattgttggagtcaatatagctaatcaattagacaaattacttgc |
377 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38934534 |
ctagtactagttttcagattacaacttcta--ctatccttatttaatcttatcatcattgttggagtaaatatagctaatcaattagacaaattacttgc |
38934437 |
T |
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| Q |
378 |
taataatgttttgccacgactcatgaatattagcactaaaagatgtctcattatg-----aatcaaatcaaatattgtccccgagttgaattgga |
467 |
Q |
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| T |
38934436 |
taataatgttttgccacgactcatgaatattagcactaaaagatgtctcattatgaatcgaatcaaatcaaatattgtccccgagttgaattgga |
38934342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 38934872 - 38934816
Alignment:
| Q |
9 |
gaagaatataattatctatgttgattgaaaatataaataataaaactcaaatctcat |
65 |
Q |
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| T |
38934872 |
gaagaatataattatctatgttgattgaaaatataaataataaaactcaaatctcat |
38934816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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