View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_15 (Length: 479)
Name: NF6563_high_15
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 48676284 - 48676669
Alignment:
| Q |
15 |
aataatttctgattttcttttagtttgcctttgaagatattttagggaaataatagacgtgtttgtttcagattctttaaaaattaattttgatgtcttg |
114 |
Q |
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| T |
48676284 |
aataatttctgattttcttttagtttgcctttgaagatatt--agggaaataatagacgtgtttgtttcagattctttaaaaattaattttgatgtcttg |
48676381 |
T |
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| Q |
115 |
gttataagtgtaagtgtttctcataaacaattttgctataaaaacgatttatatgctgaaaatgaaaagcttttgttttttggtcaagctattttaactg |
214 |
Q |
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| T |
48676382 |
gttataagtgtaagtgtttttcataaacaattttgctataaaaatgatttatatgctgaaaatgaaaagcttttattttttggtcaagctattttaacta |
48676481 |
T |
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| Q |
215 |
gcttttg--aagnnnnnnntgtttcatacaagaacgaaaaaattacaaaatcttattttataattgtaaacaaactcaaaataacattattttctcaaaa |
312 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48676482 |
gcttttgaaaaaaaaaaaatgtttcatacaagaacgaaaaaattacaaaatcttattttataattgtaaacaaactcaaaataacattattttctcaaaa |
48676581 |
T |
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| Q |
313 |
atcgattactctaaattatttacatcaagatgatttgnnnnnnntaaatagaaattaactaaaacataaatgatattttaagaatctt |
400 |
Q |
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| T |
48676582 |
atcgattactctaaattatttacatcaagatgatttagaaaaaataaatagaaattaactaaaacataaatgatattttaagaatctt |
48676669 |
T |
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