View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_23 (Length: 419)
Name: NF6563_high_23
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 34104226 - 34103842
Alignment:
| Q |
10 |
aagaatatgtgcttaaaatgggataacgttgcatcattagctttcgaggagctcaaaacaaccatcacattggtactgaacattgattcctccggctccg |
109 |
Q |
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| T |
34104226 |
aagaatgtgtgcttaaaatgggataacgttgcatcattagctttcgaggagctcaaaacaaccatcacattggtactgaacattgattcctccggctccg |
34104127 |
T |
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| Q |
110 |
ggtaaagtattgcttacttcttcaaaaaatcgagtcataggatgcaaaagcaataaacttatgtgtgggaatcatatgcaatttttgaagcaatgggaaa |
209 |
Q |
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| T |
34104126 |
ggtaaagtattgcttacttcttcaaaaaatcgagtcataggatgcaaaagcaataaacttatgtgtgggaatcatatgcaatttttgaagcaatgggaaa |
34104027 |
T |
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| Q |
210 |
gtttcaacattacttaatttgtcacaagttcatcattagacttttcaaaaagtcatgaagtctagcactgaccaagctgttcagatcacatgatcagaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34104026 |
gtttcaacattacttaatttgtcacaagttcattatgagacttttcaaaaagtcgtgaagtctagcactgaccaagctgttcagatcacatgatcagaaa |
34103927 |
T |
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| Q |
310 |
caagttcactattgttaagaatgataatgaaggataggttttgttaatgaggttgagaatgaaacaaaagtcttacttccaccta |
394 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
34103926 |
caagttcattattgttaagaatgataatgaaggataggttttgttgatgaggttgagaatgaaacacaagtcttacttccaccta |
34103842 |
T |
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