View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_24 (Length: 417)
Name: NF6563_high_24
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 7569074 - 7568666
Alignment:
| Q |
9 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7569074 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
7568975 |
T |
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| Q |
109 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattatcaatcaagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7568974 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattattaatcaagaa |
7568875 |
T |
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| Q |
209 |
tataagccggaccagcaaggtctagcgcaattagttgatgagcagtgtcggtgtgagtgttgtaaattctgaagtatcgagttcatattcctaacgataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
7568874 |
tataagccggaccagcaaggtctagcgcaattagctgatgagcagtgtcggtgtgagtgttgtaaattctggagtatcgagttcatattcctaccgataa |
7568775 |
T |
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| Q |
309 |
aaaagcatactaatnnnnnnnnnnnnnnnnnnttacacttggaaatggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaa |
408 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568774 |
aaaagcatactaatacacacacacacacacacttacacttggaaatggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaa |
7568675 |
T |
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| Q |
409 |
aattccacc |
417 |
Q |
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| T |
7568674 |
aattccacc |
7568666 |
T |
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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 33126270 - 33126392
Alignment:
| Q |
8 |
tagcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgct |
107 |
Q |
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| T |
33126270 |
tagcataggctggaagagcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagct |
33126369 |
T |
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| Q |
108 |
gcacccataatcatacctgcaat |
130 |
Q |
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| T |
33126370 |
gctcctgtaatcatacctgcaat |
33126392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 33126687 - 33126746
Alignment:
| Q |
355 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattcc |
414 |
Q |
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| T |
33126687 |
ggctgtagaagactttggatcaaaaccaatgatcaaagtgagcatagggataaaaattcc |
33126746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 50748539 - 50748443
Alignment:
| Q |
30 |
gccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctg |
126 |
Q |
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||||||||||| || |||| ||||||||| | ||| || | ||| ||||| | |||||||| |||||||| | ||||||||||| |||||||||| |
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| T |
50748539 |
gccaaatcatagtcaataattggcatgtccaatgtaggatgtctcagcctaaggttgtagtagacagttgacagagctgcacccatgatcatacctg |
50748443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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