View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_high_31 (Length: 335)
Name: NF6563_high_31
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 34985431 - 34985201
Alignment:
| Q |
18 |
aagatatactatggttaaatgttgaagttaattacacttcagaattaaaataaatnnnnnnntgccttcacgctaagttgatctaaatcgtgtcatcaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34985431 |
aagatatactatggttaaatgttgaagttaattacactttagaattaaaataaataaaaaa-tgccttcacggtaagttgatctaaatcgtgtcatcaat |
34985333 |
T |
|
| Q |
118 |
gtttctaatgtcttcgcataaagaacagttgacgacaattaaaaaattacggttgcaattgtcaccgtaatatgagattttaaaccttgattgcactata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34985332 |
gtttctaatgtcttcgcataaagaacagttgacgacaattaaaaaattacagttgaaattgtcaccgtaatatgagattttaaaccttgattgcactata |
34985233 |
T |
|
| Q |
218 |
acaatttagtaaaagtgtatacacaacgtgac |
249 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |
|
|
| T |
34985232 |
acaattcactaaaactgtatacacaacgtgac |
34985201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 34985168 - 34985115
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggacttatcttaatcaat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34985168 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaat |
34985115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 27542478 - 27542531
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggacttatcttaatcaat |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27542478 |
cttaccacatccataagtatttcaactagtttagttggacttatcttaatcaat |
27542531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 27581371 - 27581424
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggacttatcttaatcaat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
27581371 |
cttaccacatccataagtaattcaactagtttagttggaattatcttaaccaat |
27581424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 34980717 - 34980668
Alignment:
| Q |
286 |
ccacatccataagtaattcaactagtctagttggacttatcttaatcaat |
335 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
34980717 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaat |
34980668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 34993123 - 34993070
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggacttatcttaatcaat |
335 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
34993123 |
cttaccagatccataagtacttcaactagtttagttggacttatcttaatcaat |
34993070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 34993404 - 34993351
Alignment:
| Q |
18 |
aagatatactatggttaaatgttgaagttaattacacttcagaattaaaataaa |
71 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34993404 |
aagatatactatggttaattgttgaagttaattacacttaagatttaaaataaa |
34993351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 27581085 - 27581138
Alignment:
| Q |
18 |
aagatatactatggttaaatgttgaagttaattacacttcagaattaaaataaa |
71 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| |||| |||| |
|
|
| T |
27581085 |
aagatatactatggttaattgttgaagttaattacactttagaagtaaactaaa |
27581138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 27543896 - 27543857
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27543896 |
cttaccacatccataagtaattcaactagtttagttggac |
27543857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 27583237 - 27583185
Alignment:
| Q |
282 |
cttaccacatccataagtaattcaactagtctagttggacttatcttaatcaa |
334 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || ||| |||||||| |
|
|
| T |
27583237 |
cttaccacatccataagtaattcatctagtttagttgaacatatattaatcaa |
27583185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University