View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_34 (Length: 318)
Name: NF6563_high_34
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 25636573 - 25636858
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
25636573 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaa |
25636672 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtag |
217 |
Q |
| |
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||||||||||| || |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
25636673 |
ttaaagattcgcgggtttctatcattgtcttctccaaagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaag |
25636772 |
T |
|
| Q |
218 |
attgaaacaagttgtttttcctgtcttctatgacattgatccatctcatgtaagaaaaataagtggagcgtatgaggatgcctttg |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
25636773 |
attgaaactagttgtttttcctgtcttctatgacattgatccatctcatgtaagaaaaagatctggagcgtatgaggatgcctttg |
25636858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 25442381 - 25442666
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
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|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
25442381 |
catctctacgatcatctcactagaaaaggtattttcgtcttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaa |
25442480 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtag |
217 |
Q |
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||||||||||| || |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
25442481 |
ttaaagattcgcgggtttctatcattgtcttctccaaagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaag |
25442580 |
T |
|
| Q |
218 |
attgaaacaagttgtttttcctgtcttctatgacattgatccatctcatgtaagaaaaataagtggagcgtatgaggatgcctttg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
25442581 |
attgaaacaagttgtttttcctgtcttctatgacattgatccatctcatgtaagaaaaagatctggagcgtatgaggatgcctttg |
25442666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 25484332 - 25484582
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||| || |||| |
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|
| T |
25484332 |
catctctacgctcatctcaatagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaa |
25484431 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtag |
217 |
Q |
| |
|
|| || | || | ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| | | | |
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| T |
25484432 |
ttcaacagtcacgcatttctatcgttgttttctccaaagattatgcttcttcaacatggtgtttggatgaaatggctgctattagcgaatctagaataaa |
25484531 |
T |
|
| Q |
218 |
attgaaacaagttgtttttcctgtcttctatgacattgatccatctcatgt |
268 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||||||||||||||| |
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|
| T |
25484532 |
tttgaaacaagttgttttccctgttttttatgatgttgatccatctcatgt |
25484582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 303
Target Start/End: Complemental strand, 25436487 - 25436222
Alignment:
| Q |
38 |
tagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttct |
137 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||||| || |||||| | || || ||| | |
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| T |
25436487 |
tagaaaaggtatttttaccttcaaggatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgt |
25436388 |
T |
|
| Q |
138 |
atcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttc |
237 |
Q |
| |
|
||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||| || | |
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| T |
25436387 |
atcattgttttctcaagagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattcc |
25436288 |
T |
|
| Q |
238 |
ctgtcttctatgacattgatccatctcatgtaagaaaaataagtggagcgtatgaggatgcctttg |
303 |
Q |
| |
|
|||| || ||||| | |||||||||||||| ||||| || ||||| ||||||| |||| |||| |
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| T |
25436287 |
ctgttttttatgatgtcgatccatctcatgttcgaaaacaaaatggagtgtatgagaatgcatttg |
25436222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 25478989 - 25478806
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| ||||||| | ||| ||||||| ||||||||||||| |||||||| ||||||| |
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|
| T |
25478989 |
catctctatgctcatctcactagaaaaggtattttcacgttcatggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaa |
25478890 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattg |
201 |
Q |
| |
|
|| || | ||| | |||||||| |||||||||||| ||||||| ||| ||||| |||||||||||||||||| ||| ||||| |
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|
| T |
25478889 |
ttcaacaatcgcgtctttctatagttgtcttctcagaagattatgctggctcaacttggtgtttggatgaaatgactgttattg |
25478806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 35106038 - 35105788
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
||||| ||||||||||| | ||||| ||||||| ||||||||||||| || |||| ||||||| |||||| |||| || |||||||| || |||| |
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|
| T |
35106038 |
catctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaa |
35105939 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctca-aaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagta |
216 |
Q |
| |
|
|| || |||| || ||||||| ||||||||||| |||||| | || ||||||||||||||||| || |||||| || ||| ||||| | ||| | |
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| T |
35105938 |
ttcaaaattctcgggtttctattgttgtcttctctgaaagat-atgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaa |
35105840 |
T |
|
| Q |
217 |
gattgaaacaagttgtttttcctgtcttctatgacattgatccatctcatgt |
268 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||| |||||||||||||||| |
|
|
| T |
35105839 |
gattgaaacaaactgttttccctgttttttatgatgttgatccatctcatgt |
35105788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 35055125 - 35054942
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||||||||||||||| ||| ||||||| |||| |||||||| || ||||| || |||| |
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|
| T |
35055125 |
catctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaa |
35055026 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattg |
201 |
Q |
| |
|
|| | ||||| | ||| ||| ||||||||||| ||| || || |||||| ||||||||||| || |||||||| |||| |
|
|
| T |
35055025 |
ttcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggctgcaattg |
35054942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 35047075 - 35046945
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || |||||||||||| |||| || | |||||| || | ||||||| ||||||| ||||||| |
|
|
| T |
35047075 |
catctctatcatcatctcatcagaaaaggtatctctgtcttcaaggatgatcaatctctccggaaaggagatttcatttcagaataacttcttcaggcaa |
35046976 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtctt |
148 |
Q |
| |
|
|| |||||| ||||||||||| |||||||| |
|
|
| T |
35046975 |
ttcgagattcaaggctttctatagttgtctt |
35046945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 500372 - 500196
Alignment:
| Q |
18 |
catctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||| | ||| | ||||| | || |||||| | |||||||| || |||| |
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|
| T |
500372 |
catctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacagctcaacaaaggtcattctatttcaactcaacttcttcatgcaa |
500273 |
T |
|
| Q |
118 |
ttaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggct |
194 |
Q |
| |
|
|| | | || | ||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
500272 |
ttcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatcaacatggtgtttggatgaaatggct |
500196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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