View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_high_37 (Length: 288)

Name: NF6563_high_37
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_high_37
NF6563_high_37
[»] chr1 (6 HSPs)
chr1 (138-280)||(47189299-47189441)
chr1 (110-221)||(51285250-51285361)
chr1 (105-211)||(48494886-48494992)
chr1 (110-210)||(47508240-47508340)
chr1 (110-168)||(5733165-5733223)
chr1 (110-168)||(12307935-12307993)
[»] chr7 (3 HSPs)
chr7 (148-221)||(32635363-32635436)
chr7 (110-210)||(37125557-37125657)
chr7 (110-154)||(11033491-11033535)
[»] chr6 (2 HSPs)
chr6 (125-206)||(11139353-11139434)
chr6 (110-210)||(92312-92412)
[»] chr8 (1 HSPs)
chr8 (110-210)||(39312538-39312638)
[»] scaffold0026 (1 HSPs)
scaffold0026 (113-182)||(91565-91634)
[»] scaffold1342 (1 HSPs)
scaffold1342 (110-168)||(1231-1289)
[»] chr2 (3 HSPs)
chr2 (110-168)||(4009258-4009316)
chr2 (105-194)||(36620177-36620266)
chr2 (110-207)||(43326105-43326202)
[»] chr4 (1 HSPs)
chr4 (110-210)||(55403338-55403438)
[»] chr5 (1 HSPs)
chr5 (114-207)||(13627363-13627456)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 47189299 - 47189441
Alignment:
Q  138 ccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcacttttttctgaaacaacactc 237  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||    
T  47189299 ccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaacaacgctc 47189398  T
Q  238 ttctctcttctgtctggccttgcgcgagttcaactttcttctc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47189399 ttctctcttctgtctggccttgcgcgagttcaactttcttctc 47189441  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 51285250 - 51285361
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    ||||||||||||||||||||||| | | ||||||||  ||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  51285250 ggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaaccatgcc 51285349  T
Q  210 actatcactttt 221  Q
    ||  ||||||||    
T  51285350 accctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 48494992 - 48494886
Alignment:
Q  105 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaacc 204  Q
    |||| |||||| |||||||||||||||| ||| |||||  |  |||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||    
T  48494992 acagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacc 48494893  T
Q  205 atgccac 211  Q
    |||||||    
T  48494892 atgccac 48494886  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 47508240 - 47508340
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    |||||||||||||| |||||||| ||| ||||||||  ||||| | |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  47508240 ggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 47508339  T
Q  210 a 210  Q
    |    
T  47508340 a 47508340  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 5733165 - 5733223
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 168  Q
    ||||||||||| ||||||| ||| ||| |||| ||||||||||||||| ||||||||||    
T  5733165 ggcggagccacttggggactggggatggccatagcctacccattatttatgagaaatta 5733223  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 12307993 - 12307935
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 168  Q
    ||||||||| | ||||||||||| ||| ||||||||||||||||| || || |||||||    
T  12307993 ggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaatta 12307935  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  148 cccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcactttt 221  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 37125557 - 37125657
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    ||||||||||| ||||||||| | ||| ||||||||||||||||| || |  |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  37125557 ggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaaccatgcc 37125656  T
Q  210 a 210  Q
    |    
T  37125657 a 37125657  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 11033491 - 11033535
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccatta 154  Q
    |||||||||||||| |||||||||||| ||||||||  |||||||    
T  11033491 ggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 11139353 - 11139434
Alignment:
Q  125 ggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccat 206  Q
    |||| ||| ||| ||||||||| |||||||||||  |||||||||||||||||||||  ||||| |||||||||||||||||    
T  11139353 ggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 92312 - 92412
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||| || || |||||||  | |||||| ||||  |||| | || ||||||||||||||    
T  92312 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccatgcc 92411  T
Q  210 a 210  Q
    |    
T  92412 a 92412  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 39312538 - 39312638
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    |||||||||||||| ||||| || ||| ||||||||  ||||||| |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  39312538 ggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 39312637  T
Q  210 a 210  Q
    |    
T  39312638 a 39312638  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 91565 - 91634
Alignment:
Q  113 ggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttg 182  Q
    ||||||||||| |||||||| ||| |||||||||||||| ||||| || |||||||||| ||||||||||    
T  91565 ggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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Target: scaffold1342 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 1231 - 1289
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 168  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  1231 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 1289  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 4009258 - 4009316
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 168  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  4009258 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 4009316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 36620266 - 36620177
Alignment:
Q  105 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaa 194  Q
    |||| |||||||||||||| |||| ||| ||| | ||| ||| ||||||| ||||| ||||||| || ||||||||| || |||| ||||    
T  36620266 acagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 43326105 - 43326202
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 207  Q
    ||||||||||| || |||||||| ||   |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||    
T  43326105 ggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatg 43326202  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 55403338 - 55403438
Alignment:
Q  110 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 209  Q
    ||||||||||| ||||||||| | |||  |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  55403338 ggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatgcc 55403437  T
Q  210 a 210  Q
    |    
T  55403438 a 55403438  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 13627456 - 13627363
Alignment:
Q  114 gagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 207  Q
    |||||||||| |||||||| ||| ||||||||  ||||||| |||  | |||||| |||||||| ||||  |||| ||||| ||||||||||||    
T  13627456 gagccacgtgaggacaggggatggccatggccaccccattaatttgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

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