View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_high_48 (Length: 233)
Name: NF6563_high_48
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_48 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41186998 - 41186766
Alignment:
| Q |
1 |
caatctcatatttggggtgaagaatttgggaaaaaattgaaccctaaaatttataggggaattggtaaagtgggaagaaggagatgatgacttacatgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
41186998 |
caatctcatatttggggtgaagaatttgggaaaaaattgaaccctaagatttataggggaattagtaaagtgggaagaaagagatgatgacttacatgtc |
41186899 |
T |
|
| Q |
101 |
acatatagtacaattaacgctgttagcctttgatggatagaaattactgatatggtacgaattaaacaaattagaggacccatatgcaccttttttaaat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41186898 |
acatatagtacaattaacgccgttagcctttgatggatagaaattactgatatggtacgaattaaacaaattagaggacccatatacaccttttttaaat |
41186799 |
T |
|
| Q |
201 |
aagggaccaatatgaactctgatataaagataa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41186798 |
aagggaccaatatgaactctgatataaagataa |
41186766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 51691304 - 51691471
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatgtcacatatagtacaattaacgctgttagcctttgatggatagaaattact |
148 |
Q |
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||||||| |||||| |||| | ||||||||| |||||| | ||||||||||||| || | | || |||| | |||||||||||| ||| ||||| ||| |
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| T |
51691304 |
atttataagggaatcggtacaatgggaagaatgagatgttaacttacatgtcac-tacattgcagttaatgtcgttagcctttgaacgatggaaataact |
51691402 |
T |
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| Q |
149 |
gatatggtacgaattaaacaaattagaggacccatatgcaccttttttaaataagggaccaatatgaac |
217 |
Q |
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| T |
51691403 |
aatatgataccaattaaacaaattaaaggacatatctgcacttttttcaaataatggacaaatatgaac |
51691471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 29529481 - 29529650
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatgtcacatatagtacaattaacgctgttagcctttgatggatagaaattact |
148 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||| ||||||| ||| || |||| |||||||| |||| ||||||||||| |||| ||| |
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| T |
29529481 |
atttataggggaattggtaaactgggaaggaggagatgttgacttatatgccaagtataccgaaattaacgtctttagtctttgatggatgaaaatgact |
29529580 |
T |
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| Q |
149 |
gatatggtacgaattaaacaaattagaggacccatatgcacctt-ttttaaataagggaccaatatgaac |
217 |
Q |
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|| ||||| ||| |||||||||| |||||| || ||||| || ||||||||||||||||||||||||| |
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| T |
29529581 |
aatgcggtaccaatgaaacaaattaaaggacctatttgcactttcttttaaataagggaccaatatgaac |
29529650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 7178789 - 7178838
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatg |
98 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
7178789 |
atttataggggaattgataaagtgggaagaaggagatgctgacttacatg |
7178838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 32238569 - 32238500
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatgtcacatatagtacaattaac |
118 |
Q |
| |
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||||||| ||||||||||||||| | |||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
32238569 |
atttatatgggaattggtaaagtagaaagaaggagatgttgacttacatgccacatatattgcaattaac |
32238500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 12314009 - 12313909
Alignment:
| Q |
114 |
ttaacgctgttagcctttgatggatagaaattactgatatggtacgaattaaacaaattagaggacccatatgcaccttt-tttaaataagggaccaata |
212 |
Q |
| |
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|||||| | |||||||||||||||| |||| ||| |||| ||| |||||||||||||| |||| | || ||||||||| |||||| |||||||||||| |
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| T |
12314009 |
ttaacgttcttagcctttgatggatgaaaatgactaatataataccaattaaacaaattaaaggatcaatttgcacctttctttaaacaagggaccaata |
12313910 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
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|
| T |
12313909 |
t |
12313909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 33136349 - 33136439
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatg-tcacatatagtacaattaacgctgttagcctttgatggat |
138 |
Q |
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||||||||| |||||| |||||| ||||||| |||||| | ||||||||| ||| || | | ||||||||| |||| ||||||||||||| |
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| T |
33136349 |
atttataggagaattgataaagtaggaagaatgagatgttaacttacatggtcatgtacactgcaattaacgttgttggcctttgatggat |
33136439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 233
Target Start/End: Complemental strand, 85281 - 85096
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatgtcacatatagtacaattaacgctgttagcctttgatggatagaaattact |
148 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||| ||| ||||||||| |||||||| ||| |||| | ||||| ||||||||||| |||| | | |
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| T |
85281 |
atttataaaggaattggttaagtgggaaaaagaggataccaacttacatgccacatatactacggttaatgtcgttagtctttgatggatgaaaatgatt |
85182 |
T |
|
| Q |
149 |
gatatggtacgaattaaacaaattagaggacccatatgcacc-ttttttaaataagggaccaatatgaactctgatataaagataa |
233 |
Q |
| |
|
||||||||| |||||||||||||| ||| || | |||| |||||| |||||||||||||||| ||| | || |||||||||| |
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|
| T |
85181 |
aatatggtaccaattaaacaaattaaagggtttatctacaccttttttttaataagggaccaatataaaccccgaaataaagataa |
85096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 32974417 - 32974380
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatg |
86 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32974417 |
atttacaggggaattggtaaagtgggaagaaggagatg |
32974380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 22618257 - 22618208
Alignment:
| Q |
49 |
atttataggggaattggtaaagtgggaagaaggagatgatgacttacatg |
98 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| | ||||||||| |
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|
| T |
22618257 |
atttataggggaattggtaaagtggaaagaatgagatgttaacttacatg |
22618208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 7346946 - 7346904
Alignment:
| Q |
191 |
ttttttaaataagggaccaatatgaactctgatataaagataa |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||||||| |
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|
| T |
7346946 |
tttttttaataagggaccaatatgaactctaaaataaagataa |
7346904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 8755375 - 8755266
Alignment:
| Q |
64 |
ggtaaagtgggaagaaggagatgatgacttacatgtcacatatagtacaattaacgctgttagcctttgatggatagaaattactgatatggtacgaatt |
163 |
Q |
| |
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|||||||||||||||| ||||| | ||||||||| |||||| | | || |||| | ||||||||| | |||||| ||||| ||| || ||||| || | |
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| T |
8755375 |
ggtaaagtgggaagaatgagatcctaacttacatgccacatacactgcagttaatgttgttagcctctcatggatggaaatgactaatgtggtatcaact |
8755276 |
T |
|
| Q |
164 |
aaacaaatta |
173 |
Q |
| |
|
|||||||||| |
|
|
| T |
8755275 |
aaacaaatta |
8755266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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