View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_high_5 (Length: 681)
Name: NF6563_high_5
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 220 - 663
Target Start/End: Complemental strand, 53675128 - 53674685
Alignment:
| Q |
220 |
gtttacgtgatttgcattccttctgattagtccgcaaaaaacgacattgaatagggatggattctagagacatggaggggaccaaattttagtaagtact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53675128 |
gtttacgtgatttgcattccttctgattagtctgcaaaaaacgacattcgatagggatggattctagagacatggagtggaccaaattttagtaagtact |
53675029 |
T |
|
| Q |
320 |
aagatgaagagtattttagagggaatcaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53675028 |
aagatgaagagtattttagagggaataaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
53674929 |
T |
|
| Q |
420 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagtggcattgagttccacagtaggtggtggtttagtggaggaagccaagtcaatttctgct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53674928 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagtggcattgagttccacagtaggtggtggtttagtggaggaagccaagtcaatttctgct |
53674829 |
T |
|
| Q |
520 |
gattttcttcttcttcttggcggaacaagaaacaaaacgaataagtaagaactcatcagtgtaacatttattcaaatcatttataaagatctaagcattt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53674828 |
gattttcttcttcttcttggcggaacaagaaacaaaacaattaagtaagaactcatcagtgtaacatttattcaaatcatttataaagatctaagcattt |
53674729 |
T |
|
| Q |
620 |
gacaaccccctttatcattttttatagaattggcacctctaaag |
663 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53674728 |
gacaaccccctttatcattgtttatagaattggcacctctaaag |
53674685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 53675387 - 53675181
Alignment:
| Q |
10 |
agtgagatgaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttgttggtccaaacaggtaatt |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53675387 |
agtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttg---gtccaaacaggtaatt |
53675291 |
T |
|
| Q |
110 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattgaggaaaaaataatgttttgttattggatagggggaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53675290 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattggggaaaaaataatgttttgttattggatagggggaa |
53675191 |
T |
|
| Q |
210 |
tgcaacacat |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
53675190 |
tgcaacacat |
53675181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University